Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi9g00039 ATGGAGCCCGGAGATTCCTCTTTTCACAATGGACAACATGTGAATTTGAGTTCCGGTTTATTCCCCTTGCAACAAACAAATTCCTCTGCAAACACAGGAGTTCCAACTTCAATCAACTCAGGCAATGATGGTGTTGTTCCCCATCCAGCCATGCGAGACAAGAATGTCGTTTCAATTACAAGTGTGACAAAAATCATGAGACAAATTCTTCCATTAAATGCAAAAATCTCAGATGATGCTAAGGAGATGGTTCAACAAAGTGTTTCAAAGTACATAAGCTTTGTAACTAGAAAAGCCATGGAGCGATGCCAAAGCGAGTGCAGAAAGATCATGAAAGTAGAGGACCTGTTATGGGGCTTAGAGAATCTAGGATTTTCTTACTATATTGAGCCACTCACTCTTTATCTTCAACGCTATCGCCAAATTCAAAATGACCTCCAAAAACCTCGTGAAGAGCTTATTTCAACAAATGCAGAGCAAAGCATGGATAATAATGGGTCTTTTTCTAAGCCTAGTGTTGGGGATCCTCAGCTAACCTTACCACCACCGCCACCTACTTCTTTTGGGCCAGATTTTTTGAATGATCCAAATACAAATTTGGAAATTTTAGATTCAATGAACTTGGATGATTTCGATGGAATTGGATTAGATGTTGGCTACTCAGACAATGTTTTGACCAACTTTGATCCTTTTGCTCACTTCAATGAAGATGGCCTGTGA 720 0.3986 MEPGDSSFHNGQHVNLSSGLFPLQQTNSSANTGVPTSINSGNDGVVPHPAMRDKNVVSITSVTKIMRQILPLNAKISDDAKEMVQQSVSKYISFVTRKAMERCQSECRKIMKVEDLLWGLENLGFSYYIEPLTLYLQRYRQIQNDLQKPREELISTNAEQSMDNNGSFSKPSVGDPQLTLPPPPPTSFGPDFLNDPNTNLEILDSMNLDDFDGIGLDVGYSDNVLTNFDPFAHFNEDGL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi9g00039 239 MobiDBLite consensus disorder prediction 158 194 - -
Sebi9g00039 239 MobiDBLite consensus disorder prediction 176 190 - -
Sebi9g00039 239 MobiDBLite consensus disorder prediction 158 174 - -
Sebi9g00039 239 Gene3D Histone, subunit A 50 170 IPR009072 GO:0046982
Sebi9g00039 239 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 53 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sebi9g00039 239 MobiDBLite consensus disorder prediction 25 43 - -
Sebi9g00039 239 SUPERFAMILY Histone-fold 59 163 IPR009072 GO:0046982
Sebi9g00039 239 PRINTS CCAAT-binding transcription factor subunit A signature 122 140 - -
Sebi9g00039 239 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Sebi9g00039 239 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Sebi9g00039 239 MobiDBLite consensus disorder prediction 25 49 - -
Sebi9g00039 239 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 59 118 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi9g00039 Sebi-Chr9 522432 524469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi9g00039 42 189 CCAAT-HAP3 Transcription Factor Family AT1G21970 45.161 1.02e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sebi9g00039 CBFD_NFYB_HMF 5.9e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi9g00039 K08065 - qlo:115956131 129.413