Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi9g00027 ATGGACCAAGATCTGATCTTGTTTCTAACCCTTTCAATTCTAGCACTGGATGATGCTAGAGTTGATTGCTTTGATGGTTATGACATTGGTTGTGTCCTTAATCTGTTGCTACTTTGTGGCCGCTACTATCAACTTCATGTGACTCAGGGGGAGGCTCTTAACCTCTCTGATGTGGAGCAGCAAAGAACAATGAAGAAACAAGTTAGCACCCTCCTAGGATACAACATGAGAACATGGGTTTCCTCTGCTAAAGGGGCATCTGAAGATCAAATCTCACAAATTCCAAGTTGGAGATATAAAGTGGCTCTTACCAACTTAGACCTTAGCAATGATTCTGAGAGCAGTGAAAGATTGATCAATGAAGATCCGGAATGTTGCATTTGCTTAGCCAAGTACAAAGACAAAGAAGAAGTTAGGCAATTACCTTGTTCACATTTGTTCCACCTAAAATGTGTGGATCAATGGCTAAGAATTATATCCTGCTGCCCTCTTTGCAAACAAGGATTACAAAGGTAG 516 0.4089 MDQDLILFLTLSILALDDARVDCFDGYDIGCVLNLLLLCGRYYQLHVTQGEALNLSDVEQQRTMKKQVSTLLGYNMRTWVSSAKGASEDQISQIPSWRYKVALTNLDLSNDSESSERLINEDPECCICLAKYKDKEEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLQR 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi9g00027 171 ProSiteProfiles Zinc finger RING-type profile. 125 166 IPR001841 -
Sebi9g00027 171 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 68 169 - -
Sebi9g00027 171 Pfam RING-like zinc finger 124 152 IPR001841 -
Sebi9g00027 171 SUPERFAMILY RING/U-box 116 169 - -
Sebi9g00027 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 170 IPR013083 -
Sebi9g00027 171 SMART ring_2 125 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi9g00027 Sebi-Chr9 332889 335229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi9g00027 26 69 C3H Transcription Factor Family AT4G26580 40.909 3.97e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi9g00027 - - aip:107609704 201.445