Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi99g00083 ATGGATGCCATGTCCTCCGTTCTCAAGGAATACTTCGGGTTTTCGGATTTTCGGCCTTATCAGAAAGATGTTATTCAGAAAATTATTGAGAAAAGGGATTGCTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCCTTGGTTGTTAAAAAGACTGGGATAGTTGTAAGCCCTCTGATATCATTGATGCAAGACCAGGTAATGGCTTTGAAGCAGCGGGGTATCAAAGCTGAATATCTTGGAAGCGCTCAGAAGGATTTCACTGTTCAGACTAAAGCTGAGCGTGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAATTCCTACCAGTTTCTGGTCTAACTTGCTAAAGGAAGGGATTAGTCTTTTGGCTGTTGATGAAGCGCATTGCATATCAGAATGGGGGCATGATTTTCGGGTTGAATACAAGCACTTAGACAAGTTACGTGGTGTTCTGTTAGATGTTCCTTTTGTTGGTCTAACTGCAACTGCTACTGAAAGGGTTCGATTTGACATCATCAGTTCCCTAAAGATGAATGATCCTTATGTTTTAGTTGGTTCATTTGATCGCCCAAATCTTTTCTATGGTGTCAAGCTAATTAACCGTGGACAATCTTTTATTGATGAGCTTGTGCAAGAAATTTCAAAAAAAGTTGCTAGTGGTGGTTCAACTATAATTTACTGCACAACAATCAAAGATGTAGAACAGATATCCAAGTCACTTGCAGAAGCAGGTATTAAGGCTGGAATGTACCATGGTCAAATGAATGGAAGATCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAATCATGGTGGCCACAATTGCTTTTGGCATGGGCATAGATAAACCTAACATCAGACAAGTGATTCACTATGGTTGCCCCAAGAATCTAGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTAGAGATGGCATAGCTTCTGTTTGTTGGCTTTACTACACCAGAAGTGACTTTGCAAAGGGCGAATTTTATTTTGGAGATTTAAAATCAGAAAACCAAAAAAGAGCTGCTATGGAGTCATTGAAGGCTGCTGAACGCTATTGTGTGCTGGCAACTTGCAGAAGAAAGCTCTTGCTTGAATACTTTGGGGAAAAGTTTTCAGCTGATAGATGTGGAAACTGTGATAACTGCACAGTCTCAAAGGTGGACCGTGACTTGTCAAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGCAAATGGGGCCTTAATATGCCCATTGATATCTTGCGTGGGTCTCGTGCCAAGAAAATTATTGATGCTCAGTTTGACAAGCTTCCACTTCATGGACTTGGGAAAACTTACCCAGCAAATTGGTGGAAAGCACTTGGACATCAACTGATTTCTCAAGGTTATTTGAAGGAAACTTTTAGTGACATGTACAGAACTATAAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGACCGTTCTACACCAGACTATCAACCTCCTTTAGTTTTGTCATTGACTGATGAAATGGTTGGAGAAGAGGAGAACAGAAGCACAGAAGATTTCAAAATTTTAGCTACTTCAGATTTGGAGGGTTTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTAGAAGAGAGATTAAAGCTTGCTAGAAGTGTTGGAACAGCTCCATATGCTCTATGTGGTGATCAAACGATCAGGAAAATTGCTTTGACAAGACCATCTACAAAAGCAAGACTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAACAAAATATGGAGATCATTTTCTTCAAGTTATTCAGAAACTGTCGCAAGGATTAAACCTATCATTGGATGGGGAAGCAAGTTTGCAAACTAGTGAAGTGCGGAAAGTATCTCCAGTAACCAACAAATCAAGGAAGTTGACGCCAGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGACGGTCTTTCTGTTCAGAAGATTGCTAACTTTCCAGGTAGATCAGCCCCTATAAAAGAACAAACTGTTGTTGAATATCTGCTGGAAGCTGCCCAAGAAGGATTACCTTTTGATTGGACTAGACTCTGTGAGATGATAGGACTGACACAAGGTATCATATCTGAAATCCAGGTAGCTATTTCAAAGGTTGGATCTGCAGATAAGCTGAAGCCTATAAAAAATGAATTGCCAGAAGAGATAAGTTATCAGCACATCAAGACTTATTTGACAATGCGAAACTATGGAATATCCTTAGAAAGCATTCCATCTGAAGGTCACCAGTGTGGGAAAAGTGGTGAAGCTGTAAATAATGCATCAAATTTGTCAGAGCCTCCTTTAGAAAAATACGAGGTGGAAAGGCACTGTGAAACTGACAATTCTGATAAAAGTTTGACGGAAAAAGTTGACATGGAAATTGATGAAGTAGTACCTTCTGGACCTGTCAATGGTTCCCAAGTACAGAAGCTTCCATTAGCCTGTGAGGGGGAATTCACAAGCAAACGACAAAAAGTCAGTGAAACAGAGGAAATAAATTCAAGTAAATTGAAGGCTACAGAGAGTTCTGTTGTAGAGTGGTTGAAGAACCTTGATGAGGGGGTCACTTTGACTGATATTTTGGAGCACTTCAATGGATCTGATGAAGATTCCGTGGTTGAATTGCTAAGTTGCCTTGAGTGTGACTTTTCGATATATAAGAAAGGTAACATGTATAGGGCTATGTAA 2742 0.4048 MDAMSSVLKEYFGFSDFRPYQKDVIQKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDFTVQTKAERGQFDILFMTPEKACTIPTSFWSNLLKEGISLLAVDEAHCISEWGHDFRVEYKHLDKLRGVLLDVPFVGLTATATERVRFDIISSLKMNDPYVLVGSFDRPNLFYGVKLINRGQSFIDELVQEISKKVASGGSTIIYCTTIKDVEQISKSLAEAGIKAGMYHGQMNGRSREESHRLFVRDELQIMVATIAFGMGIDKPNIRQVIHYGCPKNLESYYQESGRCGRDGIASVCWLYYTRSDFAKGEFYFGDLKSENQKRAAMESLKAAERYCVLATCRRKLLLEYFGEKFSADRCGNCDNCTVSKVDRDLSREAFLLMACIHSCKGKWGLNMPIDILRGSRAKKIIDAQFDKLPLHGLGKTYPANWWKALGHQLISQGYLKETFSDMYRTISVSSKGEQFLDRSTPDYQPPLVLSLTDEMVGEEENRSTEDFKILATSDLEGFSEAEGQLYQMLLEERLKLARSVGTAPYALCGDQTIRKIALTRPSTKARLANIDGVNQHLVTKYGDHFLQVIQKLSQGLNLSLDGEASLQTSEVRKVSPVTNKSRKLTPAKFEAWKMWHEDGLSVQKIANFPGRSAPIKEQTVVEYLLEAAQEGLPFDWTRLCEMIGLTQGIISEIQVAISKVGSADKLKPIKNELPEEISYQHIKTYLTMRNYGISLESIPSEGHQCGKSGEAVNNASNLSEPPLEKYEVERHCETDNSDKSLTEKVDMEIDEVVPSGPVNGSQVQKLPLACEGEFTSKRQKVSETEEINSSKLKATESSVVEWLKNLDEGVTLTDILEHFNGSDEDSVVELLSCLECDFSIYKKGNMYRAM 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi99g00083 913 FunFam ATP-dependent DNA helicase 538 628 - -
Sebi99g00083 913 SUPERFAMILY "Winged helix" DNA-binding domain 399 504 IPR036390 -
Sebi99g00083 913 CDD SF2_C_RecQ 200 335 - -
Sebi99g00083 913 CDD DEXHc_RecQ 6 199 - -
Sebi99g00083 913 Gene3D - 200 401 IPR027417 -
Sebi99g00083 913 FunFam ATP-dependent DNA helicase 1 198 - -
Sebi99g00083 913 Gene3D HRDC domain 541 621 IPR044876 -
Sebi99g00083 913 SMART ultradead3 13 210 IPR014001 -
Sebi99g00083 913 SMART hrdc7 542 622 IPR002121 GO:0003676
Sebi99g00083 913 FunFam ATP-dependent DNA helicase 402 526 - -
Sebi99g00083 913 NCBIfam RecQ family ATP-dependent DNA helicase 6 458 IPR004589 GO:0004386|GO:0006310
Sebi99g00083 913 Gene3D - 1 198 IPR027417 -
Sebi99g00083 913 ProSiteProfiles HRDC domain profile. 542 622 IPR002121 GO:0003676
Sebi99g00083 913 Pfam Helicase conserved C-terminal domain 218 325 IPR001650 -
Sebi99g00083 913 FunFam ATP-dependent DNA helicase 200 401 - -
Sebi99g00083 913 Pfam RecQ zinc-binding 339 400 IPR032284 -
Sebi99g00083 913 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 371 IPR001650 -
Sebi99g00083 913 Pfam DEAD/DEAH box helicase 19 177 IPR011545 GO:0003676|GO:0005524
Sebi99g00083 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Sebi99g00083 913 Pfam HRDC domain 547 612 IPR002121 GO:0003676
Sebi99g00083 913 Pfam Helix-turn-helix domain 653 749 IPR029491 -
Sebi99g00083 913 SMART helicmild6 245 326 IPR001650 -
Sebi99g00083 913 Pfam RQC domain 405 501 IPR018982 GO:0006260|GO:0006281|GO:0043138
Sebi99g00083 913 SUPERFAMILY HRDC-like 541 617 IPR010997 GO:0000166|GO:0044237
Sebi99g00083 913 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Sebi99g00083 913 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 683 - -
Sebi99g00083 913 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Sebi99g00083 913 Gene3D - 402 527 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi99g00083 Sebi-Chr99 1958720 1977127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi99g00083 12 342 Eukaryotic Initiation Factors Gene Family AT3G19760 21.839 6.58e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi99g00083 K03654 - gmx:100797777 1538.47