Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi99g00062 ATGTATCTTTCAAAGGGTCATAAGCATGAAGTTGTTTTCATCTTGTGGTTCTGCTGCTATTTGCTACTGGCTGCTGCGCAGAATAATATCACTGACCCAACTGAAGTTGAAGCATTGAAAGCCATAAAGAACAGTTTGATAGATCCTAATGGAAATTTGAGCAATTGGAATCGTGGAGACCCATGTACATCTCGCTGGACAGGAGTTTTGTGCTTCAATGAAACATTAGTGGATGGCTTTCTACATGTTCAAGAATTGCAACTGTTTAATTTGAGCTTGTCCGGAACTTTGGCACCAGATATTGGCAACTTAGCTTATATGGAAATATTGAACTTCATGTGGAATAAAATAACTGGGAGTATTCCAAAGGAAATTGGCAATATCAAAACTTTACAACTGTTGCTCGTGAATGGAAATGAATTAACAGGTCCACTTCCGGAGGAGCTTGGCTATCTTCCAAACCTTGATAGAATACAGATTGATCAGAACAATATATCAGGACCTCTACCTGCATCATTTGCAAACCTGAAAAAGACAAAGCACTTTCACATGAACAATAATTCAATAAGCGGGCAAATCCCACCGGAACTTTCCCGATTACCCAACCTTGTTCACCTCCTTCTCGACAACAACAATTTATCAGGATATCTTCCCCCTGAGCTGTCCTCTTTGCCAAGCTTACTTATACTTCAACTTGATAACAATAACTTTGGTGGAAATACCATTCCGGATGCTTATGGAAACATGTCAAAATTGTTGAAGTTGAGCCTTAGGAATTGTAACTTGCAAGGACCAGTTCCTGATTTAAGCAGGATATCACACCTTCTTTATCTTGATTTATCTAACAACAGTCTTACTGGAACTATTCCATCCTACTTTTCTAGTCTTCCACACCTTCAGAAATTGTCACTCGCAAACAATTCATTGACAGGCAGTGTTCCTTCCACCATTTGGCAGAACAAAACTTTAAATGGAACAGAAAGATTTCTCTTGGATTTGGAAAATAATAAATTTACAAACATATCAGGCAATACTAATCTGCCTCCAAATGTCACACTCTTGCTTGATGGGAATCCTCTATGCTCAAATAAAACCCTGAGTCAATTCTGTAGATCTGAAAGTGCTGATGACACAAATGGCCTATTTCCATCAAACTCGAGTAACTCGTGTCCTGCTCAATCATGCCCACCTCCTTTTGAATACTCTGTGGATTGTTTCTGTGCGGCTCCATTGCTTGTTGGTTATCGACTGAAAAGTCCCGGGTTTTCAAATTTTCTTCCATACTTGAATACATTTGAGGAATACCTGACTTCTGGTCTTAGTATACATACCAATCAGCTAAACTTTACTGCTCAGTGGCAAGCAGGACCTCGACTGAGAATGAACTTGAAGATTTTTCCTGTATATGTTGATAACACCAGTTCTCATACTTTTAATAGAAGTGAGGTCCTACGGATCAGAAGCATGTTCACAGGTTGGAAAATTCCTGACAGTGATTTGTTTGGGCCTTATGAACTGATCAACTTCATTCTCCTGCCTCCATACAATGATGTGATTACCACCTCTTCAAAATCAGGGATAAGTACAGGTGCACTAGTTGGCATAATCTTAGGGTCAATTGCTTGTGCAGTGACGTTGTCCGCAATTGTTACTCTTCTTATATTAAGAATACAATTGAGAAAACATCATGCAGTTTCTAAAAGACGTCATGCATCTAAAATCTCAATAAAAATTGATGGCGTAAGGGCCTTTAGTTATGGAGAATTGTCCTCTGCTACAAACAATTTTAGTAGCTCCGCTCAAGTTGGACAAGGGGGCTATGGGAAGGTATATAAAGGTATTCTTGTAGATGGAACAGTTGTTGCCATAAAACGTGCACAAGAAGGATCCCTACAAGGTGAGAAGGAGTTCCTTACTGAAATATCATTACTGTCAAGGTTACATCATCGCAACCTTGTGTCTCTGCTCGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCAAATGGCACACTAAGGGATCACCTTTCCGTTACATCAAAAGAACCCCTGTCTTTCGCCATGAGATTGAAGATTGCACTAGGGGCAGCTAAAGGTCTTGCATATCTACACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTCAAGGCCAGCAACATATTATTGGACCCCAAGTTCTCTGCAAAAGTGGCTGATTTTGGACTATCACGACTTGCTCCAGTTCCAGATATTGAAGGGATTGTGCCTGGTCATGTATCTACCGTCGTAAAGGGAACCCCAGGTTACCTTGATCCAGAATACTTCTTAACTCACAAGTTGACCGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAACTTCTGACCGGGATGCAACCTATCTCACATGGCAAAAATATTGTTAGAGAGGGGTAG 2439 0.4018 MYLSKGHKHEVVFILWFCCYLLLAAAQNNITDPTEVEALKAIKNSLIDPNGNLSNWNRGDPCTSRWTGVLCFNETLVDGFLHVQELQLFNLSLSGTLAPDIGNLAYMEILNFMWNKITGSIPKEIGNIKTLQLLLVNGNELTGPLPEELGYLPNLDRIQIDQNNISGPLPASFANLKKTKHFHMNNNSISGQIPPELSRLPNLVHLLLDNNNLSGYLPPELSSLPSLLILQLDNNNFGGNTIPDAYGNMSKLLKLSLRNCNLQGPVPDLSRISHLLYLDLSNNSLTGTIPSYFSSLPHLQKLSLANNSLTGSVPSTIWQNKTLNGTERFLLDLENNKFTNISGNTNLPPNVTLLLDGNPLCSNKTLSQFCRSESADDTNGLFPSNSSNSCPAQSCPPPFEYSVDCFCAAPLLVGYRLKSPGFSNFLPYLNTFEEYLTSGLSIHTNQLNFTAQWQAGPRLRMNLKIFPVYVDNTSSHTFNRSEVLRIRSMFTGWKIPDSDLFGPYELINFILLPPYNDVITTSSKSGISTGALVGIILGSIACAVTLSAIVTLLILRIQLRKHHAVSKRRHASKISIKIDGVRAFSYGELSSATNNFSSSAQVGQGGYGKVYKGILVDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLLGYCDEEGEQMLVYEFMSNGTLRDHLSVTSKEPLSFAMRLKIALGAAKGLAYLHTEADPPIFHRDVKASNILLDPKFSAKVADFGLSRLAPVPDIEGIVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREG 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi99g00062 812 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Sebi99g00062 812 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 194 - -
Sebi99g00062 812 SMART LRR_typ_2 200 223 IPR003591 -
Sebi99g00062 812 SMART LRR_typ_2 152 175 IPR003591 -
Sebi99g00062 812 SMART LRR_typ_2 296 320 IPR003591 -
Sebi99g00062 812 SMART LRR_typ_2 272 295 IPR003591 -
Sebi99g00062 812 SMART LRR_typ_2 224 248 IPR003591 -
Sebi99g00062 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 716 728 IPR008271 GO:0004672|GO:0006468
Sebi99g00062 812 ProSiteProfiles Protein kinase domain profile. 596 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi99g00062 812 Gene3D Phosphorylase Kinase; domain 1 558 671 - -
Sebi99g00062 812 FunFam Leucine-rich repeat protein kinase family protein 560 671 - -
Sebi99g00062 812 Pfam Protein kinase domain 598 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi99g00062 812 SUPERFAMILY L domain-like 31 360 - -
Sebi99g00062 812 PANTHER RECEPTOR-LIKE PROTEIN 55 42 811 - -
Sebi99g00062 812 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 243 341 - -
Sebi99g00062 812 SUPERFAMILY Protein kinase-like (PK-like) 572 804 IPR011009 -
Sebi99g00062 812 SMART serkin_6 596 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi99g00062 812 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Sebi99g00062 812 Gene3D Transferase(Phosphotransferase) domain 1 672 811 - -
Sebi99g00062 812 Gene3D Ribonuclease Inhibitor 32 193 IPR032675 -
Sebi99g00062 812 Gene3D Ribonuclease Inhibitor 194 396 IPR032675 -
Sebi99g00062 812 Pfam Leucine rich repeat 274 320 IPR001611 GO:0005515
Sebi99g00062 812 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Sebi99g00062 812 PRINTS Leucine-rich repeat signature 275 288 - -
Sebi99g00062 812 PRINTS Leucine-rich repeat signature 296 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi99g00062 Sebi-Chr99 1526983 1538228 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi99g00062 18 811 Receptor kinase-like Gene Family AT5G01950 60.964 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Sebi99g00062 Pkinase 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi99g00062 - - gmx:100786467 1288.09