Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi99g00060 ATGGCTTTGGTGCATGGTCCCTTTGATGCTATTAAGGATATTGTTCGTGGGAGAGAGGCCATAAGGCTTAAAGTTCGTGTTGTTAGGATTTGGGAGATTTGTCAGTCATCTAATCCATCCAATGTTTTTTCTGTTGACATGGTGTTGGTGGATTCTCAGGGTGGAAGAATTCAGGCAAGTATTCGGAAAGCTATGATAAGGAGATTTAGGAATTCCATTGTTGAGGGTGGTGTTTACAGAATGTGCTACTTTGGTATCATTGAAAATGGTGGTGAATATAGGGGGACATTCCATGAGTTTAAGCTTCTCTTCCAACCTAGGACAACCATTTATCCTGCTGAGAGTGAGCTCATTCCTCGGTTTGGTGTGGCTGCAAAGACATCTGAGGAAATCCAGCAAACAGATGGTGTCTCTGACTATTTGTTTGACTTCATAGGTCTTTTAACTGCTGTGGGTGAAGAGAAGGAGTTTAAAAAGTTTGGTAGAACCATTAGGGTGCTTGAAGTTGAACTAACAGATGATAAGGGTGTGGTTAAGTGTTCACTGTTTGGTCATTTTATTGAAATAATGAAAACATTCTTGGAGAGTGGTGTTGATGAGCTTGCTATAATGGTCGTTCAGTTTGCAAAAGTCAAGAGTTACCTTGGTCGAGTTTCCATTTACACTGTTAGTAATTCCACTCGGCTGCTTTGGAATCCTCAGATTCCTGAAGTGATGTCTTTTAAGGATAGCATTGCCCTTAATGGTATGGACATGCATGTCCCCATTAGGCTTCTTGGTGCCAACCACTTTTCACTTTCACCCACTGAAGATTTCCTTACTCATTTCCCGAGAAAGACTGTCGAGGAACTGCACTTGACTGAAGAGGCTGGTTTCTTTATATGTCTTGGAAAAGTTGAGGCCATTGTCAAGACTGATTTTTGGTGGTACATGGCTTGCAAGTGCCATAGATCTGTTAACTTGGATGAATCTGGTGAATACTATTGTTCTAACTGTGAGAACATTGTCACTGATGTCACTCCTAGGTTTAGGTTAAAGCTGGGTGTTACTGATGTTACTGAAACTGCCCTGTTCGCTGTGTTTGATTATGATGTTGCTGCTTTGTTAGCTAAGTCATGTGCATCATTGGTTGGTGATGCAAAGGTTCCTTCTCTTGATTATCCTGCTGAGTTGGACAGCTCAATTGGCAAGGAACTTTTGTTTAAAGTTGAAATTAAGGATGATCGTGCATTCAAGTTTGATGATTCTTTCAAGGTTAGGAGGGTTTGTGATGATGAAGACATAATTAATGAGTTTAAGGAGGCAACATCAGTTAGAACCCCTGAGATGTCAAAGATGAAAGAGCCTGTGTTTGAGTTAGTTGAAGGTGGTGGTGGTTCTCACAATGCTGAAGCATCTAAGTCTGCTGCTTTGGGAGAGTTGTACAATGAAAGTGAAATCAATGCCTCTACTGTTGGGGAGCCCTCCGTTGTTTCTGCATGTTTAGCTCCACAAAAGCGCAAATCTGCACCGCGAGCTGGAAAAAAAGATGTTGCTCTCAAAGTTGTGAAGATTGAGAAGGAGTAG 1566 0.4151 MALVHGPFDAIKDIVRGREAIRLKVRVVRIWEICQSSNPSNVFSVDMVLVDSQGGRIQASIRKAMIRRFRNSIVEGGVYRMCYFGIIENGGEYRGTFHEFKLLFQPRTTIYPAESELIPRFGVAAKTSEEIQQTDGVSDYLFDFIGLLTAVGEEKEFKKFGRTIRVLEVELTDDKGVVKCSLFGHFIEIMKTFLESGVDELAIMVVQFAKVKSYLGRVSIYTVSNSTRLLWNPQIPEVMSFKDSIALNGMDMHVPIRLLGANHFSLSPTEDFLTHFPRKTVEELHLTEEAGFFICLGKVEAIVKTDFWWYMACKCHRSVNLDESGEYYCSNCENIVTDVTPRFRLKLGVTDVTETALFAVFDYDVAALLAKSCASLVGDAKVPSLDYPAELDSSIGKELLFKVEIKDDRAFKFDDSFKVRRVCDDEDIINEFKEATSVRTPEMSKMKEPVFELVEGGGGSHNAEASKSAALGELYNESEINASTVGEPSVVSACLAPQKRKSAPRAGKKDVALKVVKIEKE 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi99g00060 521 Gene3D - 118 254 IPR012340 -
Sebi99g00060 521 Gene3D - 7 115 IPR012340 -
Sebi99g00060 521 PANTHER OS03G0429900 PROTEIN 11 412 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi99g00060 521 CDD RPA1_DBD_C 282 434 IPR047192 -
Sebi99g00060 521 SUPERFAMILY Nucleic acid-binding proteins 7 114 IPR012340 -
Sebi99g00060 521 CDD RPA1_DBD_B_like 143 244 - -
Sebi99g00060 521 Pfam Domain of unknown function DUF223 47 114 IPR003871 -
Sebi99g00060 521 SUPERFAMILY Nucleic acid-binding proteins 277 430 IPR012340 -
Sebi99g00060 521 Gene3D - 273 433 IPR012340 -
Sebi99g00060 521 Pfam Replication factor-A C terminal domain 292 420 IPR013955 -
Sebi99g00060 521 SUPERFAMILY Nucleic acid-binding proteins 134 252 IPR012340 -
Sebi99g00060 521 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi99g00060 Sebi-Chr99 1488786 1491233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi99g00060 16 361 Core DNA Replication Machinery Family AT2G06510 23.529 4.33e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi99g00060 - - lja:Lj6g3v0884310.1 409.838