Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi99g00058 ATGTCAAAATTACTGAAGTTGAGCCTTAGGAATTGCAACTTACGAGGACCAATTCCTGATTTAAGTAGGATACCTCACCTTCTTTATCTTGACCTCAGTTCCAATCAGTTGAATGAATCAATTCCTTCTAATAAGCTTTCTGAAAATATCACAACCATCATTTTATCAAACAACAATCTTACTGGAACTATTTCATCCTCCTTTTCTGGTCTTCCACGTCTCCAGAAATTGTCACTTGCAAACAATTCATTGACCGGTGGTGTTCCTTCCACCATTTGGCAAAGCAAGACTTCAAATGAAAAAGAAAGACTTCTCTTGGAATTGGAAAATAATAAATTTACAACCATATCAGGAAGTACTAATCTTCCTCCAAATGTCACACTCTTAAGTGAGGTTCAAAGGATAATAAGCTTATTCACAGAATGGACATTTCCTAGTGATGATTTGTTTGGGCCTTATGAACTGATTGACTTGACTCTCCTGGATCCTTACAAGGACGTGATTGACACCTCTTCAAAAGCAAGCATAGGGATGGCTGCAATGGTTGGCATAATCTTAGGATCAATTGCTTGTGTAATGACATTGTCTGCAATTGTTATTCTTTTCATGTTAAGAAAACAATTGAGAGGTAGTCATGGAGTTTCCAAACCACGTCATGAGTTGTCCTCTGCTACAAACAATTTTGACTCCTCTGCTCAAGTTGGACGAGGAGGATATGGGAAAGTTTATAAAGGTGTTATTTCTGATGGCACAGTTGTTGCCATAAAACGTGCCCAACATGGATCACTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCAATACTCTCAAGGTTACATCATCGTAACCTTGTTACTCTGATTGGATATTGTGATGAAGAAGGTGAACAGATGCTTGTTTATGAATTTATATCGAATGGCACTCTAAAGGACCACCTTTCTGATACATCAGAAAAGCCTCTAACTTTTGCCATGAGATTGAAGATAGCCCTAGGGACAACTAAAGGTCTAACATACCTACACACAGAAGCTGATCCACCAATATTTCACCGAGATGTCAAGGCCAACAACATATTATTGGATAATGAATTCAATGCAAAAGTGGCTGATTTTGGACTTTCAAAGCTTGCCCCAGTTCCAGATATTGAAGGAATTGTTCCTGGTCATGTATCTACATTGGTAAAGGGGACCCCAGGTTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACCGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTAGAACTTTTGACTGGAATGCAACCTATCTCACATGGCAAAAATATTGTAAGAGAGGTTACTGATGCTTACCATTCTGCCCTTAAGTGTTGCCAAGACGAGCCAGAGGCACGTCCTAAAATGGAACAAGTGGTTAGAGTGCTTGAAAACATATGTTCTATGATGCCAGATTCAGATACCATGAGAGTTGAATATATTACCAATGATTCTGGCAGAGGAGCAATCGGTACACCATCTTCATCCTCTGTTGTAAGGACTCCTTTTGTATCAGCAGATGTGTCAGGTAGTAACCTTGTTAGTGGTGTAATACCAAGCATCAATCCAAGATAA 1602 0.3908 MSKLLKLSLRNCNLRGPIPDLSRIPHLLYLDLSSNQLNESIPSNKLSENITTIILSNNNLTGTISSSFSGLPRLQKLSLANNSLTGGVPSTIWQSKTSNEKERLLLELENNKFTTISGSTNLPPNVTLLSEVQRIISLFTEWTFPSDDLFGPYELIDLTLLDPYKDVIDTSSKASIGMAAMVGIILGSIACVMTLSAIVILFMLRKQLRGSHGVSKPRHELSSATNNFDSSAQVGRGGYGKVYKGVISDGTVVAIKRAQHGSLQGEKEFLTEISILSRLHHRNLVTLIGYCDEEGEQMLVYEFISNGTLKDHLSDTSEKPLTFAMRLKIALGTTKGLTYLHTEADPPIFHRDVKANNILLDNEFNAKVADFGLSKLAPVPDIEGIVPGHVSTLVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVTDAYHSALKCCQDEPEARPKMEQVVRVLENICSMMPDSDTMRVEYITNDSGRGAIGTPSSSSVVRTPFVSADVSGSNLVSGVIPSINPR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi99g00058 533 Gene3D Ribonuclease Inhibitor 47 128 IPR032675 -
Sebi99g00058 533 Gene3D Ribonuclease Inhibitor 1 46 IPR032675 -
Sebi99g00058 533 SUPERFAMILY L domain-like 2 129 - -
Sebi99g00058 533 SUPERFAMILY Protein kinase-like (PK-like) 216 473 IPR011009 -
Sebi99g00058 533 Gene3D Phosphorylase Kinase; domain 1 204 303 - -
Sebi99g00058 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672|GO:0006468
Sebi99g00058 533 ProSiteProfiles Protein kinase domain profile. 228 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi99g00058 533 Pfam Leucine rich repeat 49 90 IPR001611 GO:0005515
Sebi99g00058 533 ProSitePatterns Protein kinases ATP-binding region signature. 234 256 IPR017441 GO:0005524
Sebi99g00058 533 SMART serkin_6 228 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi99g00058 533 FunFam receptor-like protein kinase FERONIA 203 303 - -
Sebi99g00058 533 Gene3D Transferase(Phosphotransferase) domain 1 304 493 - -
Sebi99g00058 533 CDD STKc_IRAK 234 475 - -
Sebi99g00058 533 PANTHER RECEPTOR-LIKE PROTEIN 55 3 478 - -
Sebi99g00058 533 Pfam Protein kinase domain 230 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi99g00058 Sebi-Chr99 1453250 1459514 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi99g00058 1 91 Receptor kinase-like Gene Family AT5G01950 34.737 5.42e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Sebi99g00058 Pkinase 6.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi99g00058 - - gmx:100786467 578.556