Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi99g00053 | ATGTCGTATGTACCTCCACACCTGAGAAATGCGAGCTCAACCACCGTGGCTACCACCACCAGAGCCTCATCCGTAACCCTAGATAATTCCAACCACCATAATACCAAGCTCGCATTCCCTTCCTCAAACACTCACTTCAACAACAACAACAAAACCCCTCAACCTCCATCTCTCTCCTCATTCTCCAATGCCTCTCGCCGGAGTTCCGTCGCTCCTCCGTCGCACCGGATTCTCGCCGTCCCTGACCCCGTCTCCCCTCACTGGCAACCCTCCGAACGCGTTTCCCGCATGAGCCCTGACCAGATTGAAGAGGTTCGCTCACGGCTTAATCTTGATGTTACTGTTGCATCTGACTCTCCTGCTGCACCTGCACCTATAGAATCGTTCACTGATATGTGTTTGCACCCAAGTATCTTGAAGGATATTGCTTATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCAGTTGCTCTCAGTGGGAGGGATCTATTGGGTTGTGCTGAAACTGGCAGCGGGAAGACTGCAGCTTTCACGATTCCTATGATACAGCATTGCTTGGCCCAACCTCCAATTCGACGTGGTGATGGTCCCCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCATTAAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGCAGGAGTTGAGATAGCAGTTGCCACCCCTGGAAGATTTATTGATCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGATGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGATAATGAGAAATCTTCCTGAGAAGCATCAAACACTGCTGTTTAGTGCAACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAGCTAGGCCTGTGCAAGTTAAGGTGGGAAAAGTGAGCAGCCCAACAACAAATGTTTCACAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGATCGGCTTCTAGGCTTGCTTGTAGAGGAGGCATCACAGGCTGAAAAGTGTGGTCATCCATTTCCATTAACAATTGTGTTTGTTGAAAGAAAGACAAGTTGTGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGTTTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCCACCAGCATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCACATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCAGGATCAACTGGCCTAGCTACTTCTTTTTACACTGATCGTGACATGTTCCTTGTGGCGAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGAAACACTGTGTCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAGGCAGCAGCTGCACAAAAAGAGGCAAAAATTACTTCATCCAGTCACTTTGGATTGGGAGCTGCTTCAATTAACATTGAAGATAAGTATAAATTTATGATTACTGCCTCGAACATTAAAGGAGAGGGCGCAGCAGATAGTGCCTGGGATGATTAA | 1719 | 0.459 | MSYVPPHLRNASSTTVATTTRASSVTLDNSNHHNTKLAFPSSNTHFNNNNKTPQPPSLSSFSNASRRSSVAPPSHRILAVPDPVSPHWQPSERVSRMSPDQIEEVRSRLNLDVTVASDSPAAPAPIESFTDMCLHPSILKDIAYHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREIMRNLPEKHQTLLFSATMPVEIEALAKEYLARPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLGLLVEEASQAEKCGHPFPLTIVFVERKTSCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTSILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTVSFATGKVARRKEKEAAAAQKEAKITSSSHFGLGAASINIEDKYKFMITASNIKGEGAADSAWDD | 572 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi99g00053 | 572 | CDD | DEADc | 138 | 335 | - | - | |
| Sebi99g00053 | 572 | CDD | SF2_C_DEAD | 346 | 484 | - | - | |
| Sebi99g00053 | 572 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 358 | 516 | IPR001650 | - | |
| Sebi99g00053 | 572 | Pfam | DEAD/DEAH box helicase | 151 | 321 | IPR011545 | GO:0003676|GO:0005524 | |
| Sebi99g00053 | 572 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 199 | 495 | IPR027417 | - | |
| Sebi99g00053 | 572 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 158 | 334 | IPR014001 | - | |
| Sebi99g00053 | 572 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 127 | 155 | IPR014014 | GO:0003724 | |
| Sebi99g00053 | 572 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 103 | 527 | - | - | |
| Sebi99g00053 | 572 | Gene3D | - | 87 | 338 | IPR027417 | - | |
| Sebi99g00053 | 572 | Gene3D | - | 340 | 534 | IPR027417 | - | |
| Sebi99g00053 | 572 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
| Sebi99g00053 | 572 | SMART | ultradead3 | 146 | 349 | IPR014001 | - | |
| Sebi99g00053 | 572 | Pfam | Helicase conserved C-terminal domain | 377 | 475 | IPR001650 | - | |
| Sebi99g00053 | 572 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 280 | 288 | IPR000629 | - | |
| Sebi99g00053 | 572 | FunFam | probable ATP-dependent RNA helicase DDX17 | 87 | 337 | - | - | |
| Sebi99g00053 | 572 | Coils | Coil | 213 | 233 | - | - | |
| Sebi99g00053 | 572 | SMART | helicmild6 | 394 | 475 | IPR001650 | - | |
| Sebi99g00053 | 572 | MobiDBLite | consensus disorder prediction | 1 | 99 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi99g00053 | Sebi-Chr99 | 1213103 | 1220568 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi99g00053 | 127 | 497 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 35.829 | 1.03e-69 | 229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi99g00053 | K12823 | - | gmx:100787545 | 948.347 |