Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi99g00049 ATGGGTTCGGACATTGGCGTCGTCAATGCTTCGTGCGTGCACGAATGGAAGAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAATGGAAACGTGACACCCTTGATCCATTATCTGCCTTTGAGAGTTCAGTTTTCTGTAATAAATTCCACCATCACGAAACTGGTTGGAGGGAGTGTAAATTTTGCAACAAGCTTATCCACTGTGGATGCATAGTATCTAGATCTTTGTTCGAGTATCTTGACTTTGGTGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCTGCCTAGTATGATGAGGAATAATGAAAATCCTAGTGGGTCTCTTTCATTGACCCAAGCTAATGCAAGTGATCGACATTCTGCTCATTTTGATGGCAGACTGTTTGCGGGTAGTGTTGATGAAGGAAAACTTATGCAATTGTGTAGAGTTGTTGAAGCTAGTGAATCCAGCCGTTGGAATCAAGCTCAGAGAGATGGCAAAACTACATGTAGTGGGAAAACCAGCCAAGAAGTTAAGTGTTCATTCAAGGATGTGGATACTGGATTTTCAAATATTATGAAACCATCTGTTCAGTCATTGACATTTGCTACGTTAGAAAATAATAGATCAAAATGGGAGATTAAAAACATACATGAATCAACTGCACAGCCATCTTTGAGTATGTATTTGGGAAACCCATCAAAGAACAAATCTGTCCCGCCTTCTGCTGGAGAGAATGTAGAAGGGCGACTTGAGACCAAACCATCTCCTCCCTTTCATCAAGGGCAAAGATCACGCCCTATATTGCCCAAACTAGTAAAGACTGGGCTTACAATGAATGTGGAAACTGATAAAGGCACAACTTCTCAATCACGTATTGCCCGGCCACCTGCTGAAGGGAAGGGCAAGAATCAGTTACTTCCTCGATACTGGCCCAGGATTACTGATCAGGAGCTGGAGCGATTGTCCGGGGATTTGAAGTCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCATATTTCACAATCTGAAGGCCTTCCTTTGCGGATCCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCATGCAATTACGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGTGGAAAACTTGTTATGGGTTTCAGAAAGGCATCAAATTCTACAGATACACAGGATGCCTCTACATCTGCACAGTCTAATGGCATTTCAGCCAAGGGATCCACCTTTTCTGGTGGAACTGAGAATCTGCCATCAGGAAGTAATTATGTGGATCTTCTCCATTCCATGAAAGGAAATGGGGAATCTCACTTAAATGGACATCCAGAACATCTGCATTTGGGTACTGGAGCAGCTGGTTTGCTGAAAACTGAAAATGGTGAGGTGAAAAACAATCATTCACTGCAGAAACAAATTTCAGTTTTAGAAAAGAAGAGGACTCGCAATATTGGATCTAAAAGTAAAAGGTTGCTTATTGCTAATGAAGATGCTATGGAGTTGAAACTTACATGGGAAGAGGCACAGGATTTGCTTCGCCCACCGCCTAGCGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGAATTTGAAGAATATGAAGAACCCCCAGTTTTTGGAAAGAGAACAATATTCAGCACCTGTTTGACTGGGGGGAAGGAACAGTGGGCTCAATGTGATGATTGCTCTAAATGGAGAAAGCTGCCTGTTGACGCTCTTCTTCCGCCCAAGTGGACATGTTCTGAAAATGTTTGGGATACAAGCAGGTCTTCATGTTGTGCACCAGAGGAACTGAGTTCAAGGGAATTGGAAAATCTTCTGAAAACCAACAAAGATTTTAAGAAGCGGCGAATTGTAGAAAATGGCAAGTCAATCGAAGAGCACGAGCACGAGCCTTCTGGCTTAGATGCTCTTGCCAGTGCAGCAGTTTTAGGAGAAAATCTTGTTGACCCTGTTGAATCATCAGCTGGAGCCACCACCAAACATCCTCGACACCGTCCTGGCTGCTCCTGTATTGTGTGCATTCAGCCACCAAGTGGAAAGGGAAGACATAAGCCAACATGTACTTGCAATGTGTGCATGACCGTGAAGCGCCGGTTCAAAACCCTCATGCTACGGAAGAAGAAACGCCAATCAGAACGCGAAGCAGATGCTGCTGCCCAGAATGATCATATTCACCAAAAAGATGAGTCAGATACCAATGGAGCATCAAGAGATGATACAAGTCATTTAGAGAAAGAGGGAGGTCAAAATAGAGGTCAACCTGAGGTGGGTGAGTCCACTGCTGGACAGATAGATCTGAATAGTGATCCCAACCGTGAAGACATGCAAATGGATCAACTTGAAACAAGTGAATATATGAATGAAAATGGCCTAAGAAACTTTAATAGTGAAGTGCAGCCTGCTCAGCATTCTTCTTTGCTCACTCAATCTAATGGAGAAGGTCAGAGATACTTCTCTGATGAAAGATACTTTGCATCTCATGTTTGGAACCAAGAAAGAAGAGATGAGGTATACAGTCATCCCAATCAAAGTCAAAACAATCTTTCTTAA 2712 0.4347 MGSDIGVVNASCVHEWKKGWPLRSGGFAQLCCKCGFMEEWKRDTLDPLSAFESSVFCNKFHHHETGWRECKFCNKLIHCGCIVSRSLFEYLDFGGIGCVSCVNTSLPSMMRNNENPSGSLSLTQANASDRHSAHFDGRLFAGSVDEGKLMQLCRVVEASESSRWNQAQRDGKTTCSGKTSQEVKCSFKDVDTGFSNIMKPSVQSLTFATLENNRSKWEIKNIHESTAQPSLSMYLGNPSKNKSVPPSAGENVEGRLETKPSPPFHQGQRSRPILPKLVKTGLTMNVETDKGTTSQSRIARPPAEGKGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISQSEGLPLRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGKLVMGFRKASNSTDTQDASTSAQSNGISAKGSTFSGGTENLPSGSNYVDLLHSMKGNGESHLNGHPEHLHLGTGAAGLLKTENGEVKNNHSLQKQISVLEKKRTRNIGSKSKRLLIANEDAMELKLTWEEAQDLLRPPPSVKPSIVTIEDQEFEEYEEPPVFGKRTIFSTCLTGGKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCCAPEELSSRELENLLKTNKDFKKRRIVENGKSIEEHEHEPSGLDALASAAVLGENLVDPVESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAAQNDHIHQKDESDTNGASRDDTSHLEKEGGQNRGQPEVGESTAGQIDLNSDPNREDMQMDQLETSEYMNENGLRNFNSEVQPAQHSSLLTQSNGEGQRYFSDERYFASHVWNQERRDEVYSHPNQSQNNLS 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi99g00049 903 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Sebi99g00049 903 MobiDBLite consensus disorder prediction 230 246 - -
Sebi99g00049 903 Pfam CW-type Zinc Finger 608 650 IPR011124 GO:0008270
Sebi99g00049 903 ProSiteProfiles Zinc finger CW-type profile. 603 653 IPR011124 GO:0008270
Sebi99g00049 903 MobiDBLite consensus disorder prediction 441 470 - -
Sebi99g00049 903 MobiDBLite consensus disorder prediction 230 269 - -
Sebi99g00049 903 MobiDBLite consensus disorder prediction 289 310 - -
Sebi99g00049 903 Gene3D - 606 661 - -
Sebi99g00049 903 MobiDBLite consensus disorder prediction 807 824 - -
Sebi99g00049 903 MobiDBLite consensus disorder prediction 758 826 - -
Sebi99g00049 903 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Sebi99g00049 903 SMART B3_2 339 440 IPR003340 GO:0003677
Sebi99g00049 903 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 8 845 - -
Sebi99g00049 903 SUPERFAMILY DNA-binding pseudobarrel domain 337 439 IPR015300 -
Sebi99g00049 903 CDD B3_DNA 337 438 IPR003340 GO:0003677
Sebi99g00049 903 Gene3D - 317 444 IPR015300 -
Sebi99g00049 903 FunFam B3 domain-containing transcription repressor VAL1 317 444 - -
Sebi99g00049 903 MobiDBLite consensus disorder prediction 761 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi99g00049 Sebi-Chr99 1099502 1106144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi99g00049 1 876 B3 DNA Binding Superfamily AT2G30470 47.738 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi99g00049 B3 3.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi99g00049 K09287 - gmx:100789848 1448.34