Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi99g00049 | ATGGGTTCGGACATTGGCGTCGTCAATGCTTCGTGCGTGCACGAATGGAAGAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAATGGAAACGTGACACCCTTGATCCATTATCTGCCTTTGAGAGTTCAGTTTTCTGTAATAAATTCCACCATCACGAAACTGGTTGGAGGGAGTGTAAATTTTGCAACAAGCTTATCCACTGTGGATGCATAGTATCTAGATCTTTGTTCGAGTATCTTGACTTTGGTGGTATAGGTTGTGTTAGCTGTGTAAATACTTCCCTGCCTAGTATGATGAGGAATAATGAAAATCCTAGTGGGTCTCTTTCATTGACCCAAGCTAATGCAAGTGATCGACATTCTGCTCATTTTGATGGCAGACTGTTTGCGGGTAGTGTTGATGAAGGAAAACTTATGCAATTGTGTAGAGTTGTTGAAGCTAGTGAATCCAGCCGTTGGAATCAAGCTCAGAGAGATGGCAAAACTACATGTAGTGGGAAAACCAGCCAAGAAGTTAAGTGTTCATTCAAGGATGTGGATACTGGATTTTCAAATATTATGAAACCATCTGTTCAGTCATTGACATTTGCTACGTTAGAAAATAATAGATCAAAATGGGAGATTAAAAACATACATGAATCAACTGCACAGCCATCTTTGAGTATGTATTTGGGAAACCCATCAAAGAACAAATCTGTCCCGCCTTCTGCTGGAGAGAATGTAGAAGGGCGACTTGAGACCAAACCATCTCCTCCCTTTCATCAAGGGCAAAGATCACGCCCTATATTGCCCAAACTAGTAAAGACTGGGCTTACAATGAATGTGGAAACTGATAAAGGCACAACTTCTCAATCACGTATTGCCCGGCCACCTGCTGAAGGGAAGGGCAAGAATCAGTTACTTCCTCGATACTGGCCCAGGATTACTGATCAGGAGCTGGAGCGATTGTCCGGGGATTTGAAGTCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCATATTTCACAATCTGAAGGCCTTCCTTTGCGGATCCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCATGCAATTACGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGTGGAAAACTTGTTATGGGTTTCAGAAAGGCATCAAATTCTACAGATACACAGGATGCCTCTACATCTGCACAGTCTAATGGCATTTCAGCCAAGGGATCCACCTTTTCTGGTGGAACTGAGAATCTGCCATCAGGAAGTAATTATGTGGATCTTCTCCATTCCATGAAAGGAAATGGGGAATCTCACTTAAATGGACATCCAGAACATCTGCATTTGGGTACTGGAGCAGCTGGTTTGCTGAAAACTGAAAATGGTGAGGTGAAAAACAATCATTCACTGCAGAAACAAATTTCAGTTTTAGAAAAGAAGAGGACTCGCAATATTGGATCTAAAAGTAAAAGGTTGCTTATTGCTAATGAAGATGCTATGGAGTTGAAACTTACATGGGAAGAGGCACAGGATTTGCTTCGCCCACCGCCTAGCGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGAATTTGAAGAATATGAAGAACCCCCAGTTTTTGGAAAGAGAACAATATTCAGCACCTGTTTGACTGGGGGGAAGGAACAGTGGGCTCAATGTGATGATTGCTCTAAATGGAGAAAGCTGCCTGTTGACGCTCTTCTTCCGCCCAAGTGGACATGTTCTGAAAATGTTTGGGATACAAGCAGGTCTTCATGTTGTGCACCAGAGGAACTGAGTTCAAGGGAATTGGAAAATCTTCTGAAAACCAACAAAGATTTTAAGAAGCGGCGAATTGTAGAAAATGGCAAGTCAATCGAAGAGCACGAGCACGAGCCTTCTGGCTTAGATGCTCTTGCCAGTGCAGCAGTTTTAGGAGAAAATCTTGTTGACCCTGTTGAATCATCAGCTGGAGCCACCACCAAACATCCTCGACACCGTCCTGGCTGCTCCTGTATTGTGTGCATTCAGCCACCAAGTGGAAAGGGAAGACATAAGCCAACATGTACTTGCAATGTGTGCATGACCGTGAAGCGCCGGTTCAAAACCCTCATGCTACGGAAGAAGAAACGCCAATCAGAACGCGAAGCAGATGCTGCTGCCCAGAATGATCATATTCACCAAAAAGATGAGTCAGATACCAATGGAGCATCAAGAGATGATACAAGTCATTTAGAGAAAGAGGGAGGTCAAAATAGAGGTCAACCTGAGGTGGGTGAGTCCACTGCTGGACAGATAGATCTGAATAGTGATCCCAACCGTGAAGACATGCAAATGGATCAACTTGAAACAAGTGAATATATGAATGAAAATGGCCTAAGAAACTTTAATAGTGAAGTGCAGCCTGCTCAGCATTCTTCTTTGCTCACTCAATCTAATGGAGAAGGTCAGAGATACTTCTCTGATGAAAGATACTTTGCATCTCATGTTTGGAACCAAGAAAGAAGAGATGAGGTATACAGTCATCCCAATCAAAGTCAAAACAATCTTTCTTAA | 2712 | 0.4347 | MGSDIGVVNASCVHEWKKGWPLRSGGFAQLCCKCGFMEEWKRDTLDPLSAFESSVFCNKFHHHETGWRECKFCNKLIHCGCIVSRSLFEYLDFGGIGCVSCVNTSLPSMMRNNENPSGSLSLTQANASDRHSAHFDGRLFAGSVDEGKLMQLCRVVEASESSRWNQAQRDGKTTCSGKTSQEVKCSFKDVDTGFSNIMKPSVQSLTFATLENNRSKWEIKNIHESTAQPSLSMYLGNPSKNKSVPPSAGENVEGRLETKPSPPFHQGQRSRPILPKLVKTGLTMNVETDKGTTSQSRIARPPAEGKGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISQSEGLPLRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGKLVMGFRKASNSTDTQDASTSAQSNGISAKGSTFSGGTENLPSGSNYVDLLHSMKGNGESHLNGHPEHLHLGTGAAGLLKTENGEVKNNHSLQKQISVLEKKRTRNIGSKSKRLLIANEDAMELKLTWEEAQDLLRPPPSVKPSIVTIEDQEFEEYEEPPVFGKRTIFSTCLTGGKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCCAPEELSSRELENLLKTNKDFKKRRIVENGKSIEEHEHEPSGLDALASAAVLGENLVDPVESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAAQNDHIHQKDESDTNGASRDDTSHLEKEGGQNRGQPEVGESTAGQIDLNSDPNREDMQMDQLETSEYMNENGLRNFNSEVQPAQHSSLLTQSNGEGQRYFSDERYFASHVWNQERRDEVYSHPNQSQNNLS | 903 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi99g00049 | 903 | Pfam | B3 DNA binding domain | 339 | 438 | IPR003340 | GO:0003677 | |
Sebi99g00049 | 903 | MobiDBLite | consensus disorder prediction | 230 | 246 | - | - | |
Sebi99g00049 | 903 | Pfam | CW-type Zinc Finger | 608 | 650 | IPR011124 | GO:0008270 | |
Sebi99g00049 | 903 | ProSiteProfiles | Zinc finger CW-type profile. | 603 | 653 | IPR011124 | GO:0008270 | |
Sebi99g00049 | 903 | MobiDBLite | consensus disorder prediction | 441 | 470 | - | - | |
Sebi99g00049 | 903 | MobiDBLite | consensus disorder prediction | 230 | 269 | - | - | |
Sebi99g00049 | 903 | MobiDBLite | consensus disorder prediction | 289 | 310 | - | - | |
Sebi99g00049 | 903 | Gene3D | - | 606 | 661 | - | - | |
Sebi99g00049 | 903 | MobiDBLite | consensus disorder prediction | 807 | 824 | - | - | |
Sebi99g00049 | 903 | MobiDBLite | consensus disorder prediction | 758 | 826 | - | - | |
Sebi99g00049 | 903 | ProSiteProfiles | B3 DNA-binding domain profile. | 339 | 440 | IPR003340 | GO:0003677 | |
Sebi99g00049 | 903 | SMART | B3_2 | 339 | 440 | IPR003340 | GO:0003677 | |
Sebi99g00049 | 903 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 | 8 | 845 | - | - | |
Sebi99g00049 | 903 | SUPERFAMILY | DNA-binding pseudobarrel domain | 337 | 439 | IPR015300 | - | |
Sebi99g00049 | 903 | CDD | B3_DNA | 337 | 438 | IPR003340 | GO:0003677 | |
Sebi99g00049 | 903 | Gene3D | - | 317 | 444 | IPR015300 | - | |
Sebi99g00049 | 903 | FunFam | B3 domain-containing transcription repressor VAL1 | 317 | 444 | - | - | |
Sebi99g00049 | 903 | MobiDBLite | consensus disorder prediction | 761 | 805 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi99g00049 | Sebi-Chr99 | 1099502 | 1106144 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi99g00049 | 1 | 876 | B3 DNA Binding Superfamily | AT2G30470 | 47.738 | 0.0 | 709 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Sebi99g00049 | B3 | 3.1e-16 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sebi99g00049 | K09287 | - | gmx:100789848 | 1448.34 |