LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi99g00016	ATGGAGAATAAATCAAATATCTTAATGCAAAGATATGAATTAGGAAGATTACTAGGCCAGGGCACTTTCGGAAAGGTTTACTATGCAAGGAGTACAATGAATAACCAGAGTGTGGCTATCAAAGTGATTGACAAAGATAAGGTTATGAGAACTGGGCAAGCTGATCAAATCAAGCGTGAAATATCTGTTATGAGGCTGGCTAGACACCCCAATATTATACATCTTATTGAGGTTATGGCCAACAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGTGAGCTTTTCAACAAGGTGGCTAAAGGAAAACTCAAAGAAGGTGTTGCTCACAAATATTTTAAGCAGCTAATCAATGCAGTAGATTTTTGTCACAGTAGAGGCGTGTACCACCGAGACATAAAGCCTGAGAACATTCTATTGGATGAAAATGGGAATTTAAAGGTCTCTGATTTTGGGTTAAGTGCTCTTGCTGAATCCAAGCGGCAGGATGGCTTACTCCATACACCTTGTGGTACCCCTGCCTATGTTGCTCCTGAAGTAATCAAAAGGAAGGGATATGACGGTGCCAAAGCTGATATTTGGTCTTGTGGAATAGTTCTATTTGTCTTATTGGCAGGCTATCTCCCTTTTCATGACTCAAATTTGGTAGAGATGTATAGGAAGATAAGTAAAGCAGAATTGAAATACCCTAATTGGTTCCCACCAGAAGTATGCAAGCTGTTGGGCATGATGTTGGATCCAAATCCTGACACTAGGATTTCCATAGCTATGGTTAGGGAAGATCGTTGGTTTAAGAAAGGACCAAATCCTAGAAATAAAAAACCTGTAGTGGAAAACAACACTGTCTCTTCTTCAGGTACAATTCCTTCTGATAAAATTGATGAAAGTGATGGCCTAGCAGCAGAAGCAAAGGAAGAGTCGGTTGTGCCCGTAAGTATAAATGCCTTTGATATCATCTCCCTTTCTGCTGGTTTTGATCTTTCTAGATTCTTTGATGAGAGTTTTCAGAAAAGGGAAGCTAGATTTAGTTCAAAACTACCTGCGTCAGTCATCATCTCCAAGCTGGAAGACATTGCTAGGCAACTGAGGATGAAAATAAAGAAAAAAGCTGCTGGTTTATTGAAATTAGAGGGCTTCAAGGAAGGTAGAAAAGGGGTTTTATCCATTGATGCAGAGATATTTGAGGTTACTCCTCTTTTCCATTTGGTGGAGGTGAAAAAGTCAAATGGAGATACATTGGAATATCAGAAAATATTGAAAGAGGATATAAGGCCTGCTCTTCAGGATATTGTTTGGGTCTGGCAAAGTGATCAACAACTTCAATCACAACAGTCAGAGCAACCTATACATGACCAACAGCAACAAGAAACACAGTCATAA	1386	0.3925	MENKSNILMQRYELGRLLGQGTFGKVYYARSTMNNQSVAIKVIDKDKVMRTGQADQIKREISVMRLARHPNIIHLIEVMANKSKIYFVMEYAKGGELFNKVAKGKLKEGVAHKYFKQLINAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALAESKRQDGLLHTPCGTPAYVAPEVIKRKGYDGAKADIWSCGIVLFVLLAGYLPFHDSNLVEMYRKISKAELKYPNWFPPEVCKLLGMMLDPNPDTRISIAMVREDRWFKKGPNPRNKKPVVENNTVSSSGTIPSDKIDESDGLAAEAKEESVVPVSINAFDIISLSAGFDLSRFFDESFQKREARFSSKLPASVIISKLEDIARQLRMKIKKKAAGLLKLEGFKEGRKGVLSIDAEIFEVTPLFHLVEVKKSNGDTLEYQKILKEDIRPALQDIVWVWQSDQQLQSQQSEQPIHDQQQQETQS	461

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi99g00016	461	FunFam	Non-specific serine/threonine protein kinase	310	434	-	-
	Sebi99g00016	461	Gene3D	Kinase associated domain 1, KA1	315	435	-	-
	Sebi99g00016	461	Pfam	Protein kinase domain	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi99g00016	461	SMART	serkin_6	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi99g00016	461	Gene3D	Transferase(Phosphotransferase) domain 1	3	314	-	-
	Sebi99g00016	461	FunFam	Non-specific serine/threonine protein kinase	5	308	-	-
	Sebi99g00016	461	MobiDBLite	consensus disorder prediction	276	291	-	-
	Sebi99g00016	461	ProSiteProfiles	Protein kinase domain profile.	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi99g00016	461	ProSitePatterns	Protein kinases ATP-binding region signature.	18	41	IPR017441	GO:0005524
	Sebi99g00016	461	CDD	CIPK_C	316	430	-	-
	Sebi99g00016	461	FunFam	Non-specific serine/threonine protein kinase	3	91	-	-
	Sebi99g00016	461	SUPERFAMILY	Protein kinase-like (PK-like)	8	283	IPR011009	-
	Sebi99g00016	461	ProSiteProfiles	NAF domain profile.	310	334	IPR018451	GO:0007165
	Sebi99g00016	461	Coils	Coil	456	461	-	-
	Sebi99g00016	461	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	4	429	-	-
	Sebi99g00016	461	Pfam	NAF domain	312	370	IPR004041	GO:0007165
	Sebi99g00016	461	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	130	142	IPR008271	GO:0004672\|GO:0006468
	Sebi99g00016	461	MobiDBLite	consensus disorder prediction	269	291	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi99g00016	Sebi-Chr99	246577	247962	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi99g00016	1	440	CBL-interacting serine-threonine protein kinases	AT5G58380	67.257	0.0	626

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Sebi99g00016		Pkinase	1.8e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi99g00016	-		-	gmx:100790905	757.288