Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi99g00011 ATGAACTCAGAACCAGTCTCGAAGTATTACCAGAAGGCAGAGGAGATACTTAAGTTGCTGAAGCCAATCATTGATGCGATTGTTAATTCAGAGTTAACTACTGATGAAGTGCTTAATAAGATGTTTGAAGAACTTGGCCATGTTATTGATGAATTAAAGGAGCATATTGAGAATTGGCACCCGTTGTCTAGCAAAGTTTACTTTATAATGATATATGAACTTCTTAAAGAGGCAATAAGTGTGCAGTCATTAGATTGCTTGTTGATTCATATAGAAAAGTTTACTGCACAGATATCGATGTTAATCTCATGGATACTTATTGATAGCCAGACATCAGTCCTTCCTAGAAGATTGCTGTTTACTTTGTCTCCGCCTTCGCGAGATGTGATTAGGTTAAAAGTTATGCAAGTTGCACCCTTGATATCTAGGATTCGGACTTCGGGGCTCAATATTTTTCCGCAGCTGAAGGTCTCTCAGCAATGTCCCCATGATGAATTGAGTTCTGAACATTTGGAGCACTGTGTTCAGAAACTTAAGCTTTTGGGACATGAAGAAACCTCATCAGTCATTAAAAAAGCTATTACAGAGCAACTTGAAGGTGTAGGACCCAGTTCTGAGGTCCTGGAAAAAATAGCTGATAGCCTCGGGCTAAGGTCTAATCAGGAGGTTCTGATTGAAGCCGTGGCCCTAGAAAAGTTGAAGGAGAATGCTGAACAAACTGAAAAGACTGCAGAAGTGGAATACATTGATAAAATGATTGCTGTTGTTACACGTATGCATGAGCGTCTTGTTATGCTTAAGCAAGCCCAGAGTTGCAGCCCAGTTCCAGTGCCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAGTTGATGACTGATCCAGTGATTGTGGCCTCAGGGCAAACCTATGAGCGGGCTTTTATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACACCAGACTCTGGCTCACACCAACCTAATACCTAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGAAACTGGCTGATCCTACAAAATCTGCAAATTTAAATCAACCATCTGCTCTTCATGGATATGTGGAGTCTGGTACAACCAGGGAATCCCCTGTTTTTCCTCATTCCAGGAGCAACCAGCCATCCTCACCTGAGTCAGCTCGTTCCCGTTCTTTTAGTTCACCAGAAGGTTCCTTAAGTGGCATGGTTAATGGGCAATATATGGATCTTGCAAGAATGTCACCTGCAGGTTTAGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTATAGATTCAGTTGGTCAACCTTCAATGTCGCCATCTAGAAGGGAATCTTCCAGTGCCTTTAGCTCTGAACAATCTCAAACCCATGTTAGAGCTGTATCTGATTCCAGTGCATTTTCTGGTGCAAATTTTCCCCAAGAAACACAAGGTGATGACAACAGTGCTCCCCAGCTGTCAACTAGTCCAGGCTACAGTAGAGATGCTTCTGGTGAATTAAATCCAGGGCCAGATGCTGCTGGTGCTGCTGCCATGCCATCAATGCATAGAGAACCTGAGTTCCCACCCCGATTGATGGAGGCAAGGTCTCGAAGCCAAGCTATATGGAGGAGGCCATCAGAGAGGCTTGTTCCTAGGATAGTGTCTTCTTCTGCTATTGAAACCAGGGCTGATCTTTCTGGTATTGAATCCCAGGTTCGGAATTTAGTTGAGGGCTTGAAGAGCTGTGATCTTGATACTCAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAATTGTGGAGCCATTAGCTTATTAGTTGACTTACTTCAATCAACTGATGCAAAGATCCAGGAAAATGCTGTTACAGCACTTCTCAATTTATCAATTAATGATAACAATAAAAGTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTGCTTCAGAGTGGGAGCCCAGAAGCCAAGGAGAACTCAGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTAACATAGGGAGGTCAGGGGCAATTAGACCACTCGTAGATTTATTAGGGAATGGAACCCCAAGAGGGAAGAAAGACGCTGCCACTGCTTTGTTTAATTTATCAATATATCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTAAAGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAACCTTGCCACAATTCCAGAAGGAAGAAATGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTAGTTGAGGTTGTTGAGTTGGGTTCTGCGAGAGGAAAGGAGAATGCAGCAGCAGCTCTTTTACATCTTTGCTTACAAAGTAACAGATTTTTAAGCATGGTGCTCCAACAAGGAGCTGTCCCACCATTAGTAGCTTTATCTCAGTCAGGCACACCAAGGGCCAAAGAAAAGGCCCAGGCCCTCCTTAATCAATTTAGAAGTCAAAGACACGGGAATGCTGGGAGGGGCTGA 2574 0.4336 MNSEPVSKYYQKAEEILKLLKPIIDAIVNSELTTDEVLNKMFEELGHVIDELKEHIENWHPLSSKVYFIMIYELLKEAISVQSLDCLLIHIEKFTAQISMLISWILIDSQTSVLPRRLLFTLSPPSRDVIRLKVMQVAPLISRIRTSGLNIFPQLKVSQQCPHDELSSEHLEHCVQKLKLLGHEETSSVIKKAITEQLEGVGPSSEVLEKIADSLGLRSNQEVLIEAVALEKLKENAEQTEKTAEVEYIDKMIAVVTRMHERLVMLKQAQSCSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVKLADPTKSANLNQPSALHGYVESGTTRESPVFPHSRSNQPSSPESARSRSFSSPEGSLSGMVNGQYMDLARMSPAGLDDRSASSDESSIDSVGQPSMSPSRRESSSAFSSEQSQTHVRAVSDSSAFSGANFPQETQGDDNSAPQLSTSPGYSRDASGELNPGPDAAGAAAMPSMHREPEFPPRLMEARSRSQAIWRRPSERLVPRIVSSSAIETRADLSGIESQVRNLVEGLKSCDLDTQREATAELRLLAKHNMDNRIAIANCGAISLLVDLLQSTDAKIQENAVTALLNLSINDNNKSAIANAGAIEPLIHVLQSGSPEAKENSAATLFSLSVIEENKINIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIYHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLQSNRFLSMVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi99g00011 857 SMART arm_5 766 806 IPR000225 GO:0005515
Sebi99g00011 857 SMART arm_5 644 684 IPR000225 GO:0005515
Sebi99g00011 857 SMART arm_5 685 725 IPR000225 GO:0005515
Sebi99g00011 857 SMART arm_5 726 765 IPR000225 GO:0005515
Sebi99g00011 857 SMART arm_5 603 643 IPR000225 GO:0005515
Sebi99g00011 857 SMART arm_5 557 601 IPR000225 GO:0005515
Sebi99g00011 857 MobiDBLite consensus disorder prediction 429 503 - -
Sebi99g00011 857 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 351 IPR013083 -
Sebi99g00011 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 737 778 IPR000225 GO:0005515
Sebi99g00011 857 FunFam RING-type E3 ubiquitin transferase 557 852 - -
Sebi99g00011 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 614 656 IPR000225 GO:0005515
Sebi99g00011 857 Pfam U-box domain 277 347 IPR003613 GO:0004842|GO:0016567
Sebi99g00011 857 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Sebi99g00011 857 MobiDBLite consensus disorder prediction 373 410 - -
Sebi99g00011 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 655 697 IPR000225 GO:0005515
Sebi99g00011 857 FunFam RING-type E3 ubiquitin transferase 276 351 - -
Sebi99g00011 857 SUPERFAMILY RING/U-box 269 353 - -
Sebi99g00011 857 Coils Coil 220 250 - -
Sebi99g00011 857 MobiDBLite consensus disorder prediction 373 409 - -
Sebi99g00011 857 Gene3D - 553 852 IPR011989 -
Sebi99g00011 857 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 696 738 IPR000225 GO:0005515
Sebi99g00011 857 MobiDBLite consensus disorder prediction 424 528 - -
Sebi99g00011 857 Pfam Armadillo/beta-catenin-like repeat 644 683 IPR000225 GO:0005515
Sebi99g00011 857 Pfam Armadillo/beta-catenin-like repeat 687 724 IPR000225 GO:0005515
Sebi99g00011 857 Pfam Armadillo/beta-catenin-like repeat 605 642 IPR000225 GO:0005515
Sebi99g00011 857 CDD RING-Ubox_PUB 278 330 IPR045210 -
Sebi99g00011 857 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Sebi99g00011 857 PANTHER U BOX DOMAIN-CONTAINING 5 846 - -
Sebi99g00011 857 SUPERFAMILY ARM repeat 574 846 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi99g00011 Sebi-Chr99 195048 199336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi99g00011 237 857 U-box Gene Family AT2G23140 63.385 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi99g00011 - - tpra:123913325 1224.15