Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi999g00009 ATGGATCTTCATCCAGAGACTCTGGTGCATATTAATGACTTTGAGCTGCATGACTTTGTCGATGATGCCAACTTTGATCAGTTTATCAATTCAATTCGTGGGGAGAATGAAGATGACATCTGTAGCTTCAGTTCTGACCTTCTGAATGGCTGCTTTGTTGATAACACATTCCTTTCATACCCTGCAAACCCATTTGACCAGTGCAATAGTAATTCTGTGAACGTTTATGATCCAAGCTCTACACTTAGCTCCTTCTCTTTTTTTGATGAAGAAGAACCCAAGGGAGAAAGTGGAGAAGCAGAAGAAGGGGAGAATTCTTCTGAAACAACAACCATCACCACTGCAACTACAAGTGTTAATACTAAGTCAAGGCCAAAAACTGATAGGTCTAAGACTTTGATTTCTGAGAGGAGGAGGAGAGGTCGAATGAAGGACAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATCATTGGAGATGCTGTTTCATATGTGTATGAGCTTCAAGCACAAGCCAAGAAGCTCAAGGCTGAGGTTGCAGGTCTTGAAACATCCTTATTAGTGTCTGAAAATTATCAAGGATCAATTGAAAACCCCATGAAGGTTCAATTCACTGACAACAGCCGTTCAATCTACAAGAAGATCATTCAGATGGACATGTTTCAAGTGGATGAAAGAGAGTTTTATGTGAAAATAGTGTGCAATAAGGGAGAAGGGGTGGCTGCCTCACTGTACAAGTCTCTTGAATCTCTGACAGGCTTCAATGTTAAGAATTCAAACTTGGCCACAGCTTCTGACAGTATTCTACTTACATTTTCATTGAATGTTAAAGGCTCAGAACCAGAAATTAACCTGCCCAATTTGAAGCTATGGGTGACTGGCGCTTTTCTGAACCAAGGCTTTCAATTCATACCTTCTTTTCACACTTGA 954 0.4057 MDLHPETLVHINDFELHDFVDDANFDQFINSIRGENEDDICSFSSDLLNGCFVDNTFLSYPANPFDQCNSNSVNVYDPSSTLSSFSFFDEEEPKGESGEAEEGENSSETTTITTATTSVNTKSRPKTDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVYELQAQAKKLKAEVAGLETSLLVSENYQGSIENPMKVQFTDNSRSIYKKIIQMDMFQVDEREFYVKIVCNKGEGVAASLYKSLESLTGFNVKNSNLATASDSILLTFSLNVKGSEPEINLPNLKLWVTGAFLNQGFQFIPSFHT 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi999g00009 317 MobiDBLite consensus disorder prediction 88 137 - -
Sebi999g00009 317 Pfam Helix-loop-helix DNA-binding domain 134 177 IPR011598 GO:0046983
Sebi999g00009 317 Gene3D - 118 193 IPR036638 GO:0046983
Sebi999g00009 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 192 IPR036638 GO:0046983
Sebi999g00009 317 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 307 - -
Sebi999g00009 317 SMART finulus 133 182 IPR011598 GO:0046983
Sebi999g00009 317 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 123 193 - -
Sebi999g00009 317 Coils Coil 173 193 - -
Sebi999g00009 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Sebi999g00009 317 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi999g00009 Sebi-Chr999 136033 137548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi999g00009 8 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.526 8.29e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi999g00009 HLH 7.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi999g00009 K26214 - gmx:100778649 407.142