Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi999g00004 ATGAAGGGGTTTTGGAGCCATCCTCATCCCCCAGGAAAGAAAATCCCCTCTCTCCCCCTCTCCCGCCAAAACCCTAACAACCTCAAAACCCCCGAAACCCTCCAACAACCCAACAAATCACCGGAAACCGTTGAAACAGTTCAACAGCCCAACAAATCACCGGAAACCGTTCAGCAGCCCAACAAACCACCGCAGGAAACCGCCAAGGCTGAACCTCCGAACAAGATTAGCAAAGTGTCTTCTTCCCGGGAGATAATCGCTAAGCTGAAGGAGCGGGTTCCGCGGCTGAAGAAGAAGCCCTCGGAGTTCGATCCTAGCTCGGTTACATGCTGGGAGAAAGGCCAACCCGTGCCTTTCTTATTCCTCTCCTTGGCGTTCGACATGATCGCTGAGGAGACTGGACGAATTGTGATTACAGACATTGTGTGCAACCTGTTGAGGACTGTGATTCACGCCACTCCGGAGGATCTCGTGCCGGTTGTTTATCTCTCAGCGAACAGGATTGCTCCAGCGCACGAAGGGCTGGAATGGGAATCGGCGACGCTTCCATTATCAAGGCACTTGCCGAGGCTTGTGGAAGGACTGAGTCGCAGATTAAGAATCAGTACAAGGTCCTTTGATTCTTTGGAGAAAGGTGACTTGGGTTTAGTTGCCAAGCGAGCCGAAGGTTTTCAACACCTTTCGCCTTATTGCCAAGGAATCGGTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATAAAGTCACTTCTTGTCGCTGCAACTGACTGTGAACCTCTATATCTAATCCGTTTGCTACAGGCTGCAAAGATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAGTATCTGCACTGCTTAAGGATGGTGTGTGGATACTTCCAAAGACATGTAATTTTACTCCTGGTGTTCCAGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTCTCTGAAATTCTAAATAAATTCCAGGATGCTGAGTTTACCTGTGAATACAAATATGATGGGGAGCGTGCTCAGATACATTACATGGAGAATGGCTCAGTTGAGATTTACAGTAGAAATGCGGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTCAAGTAGTTAAATTTGTGATAGAGTTGACGAAAGGTGGAAACCTAAAAGAAGCTGTTCCACATTTAAAGACAAAATTTAAAGGTATCCATGAAAACATAAGAGGAGCTGTGTTGGGGTGGGTAGAAGGTTAG 1254 0.4657 MKGFWSHPHPPGKKIPSLPLSRQNPNNLKTPETLQQPNKSPETVETVQQPNKSPETVQQPNKPPQETAKAEPPNKISKVSSSREIIAKLKERVPRLKKKPSEFDPSSVTCWEKGQPVPFLFLSLAFDMIAEETGRIVITDIVCNLLRTVIHATPEDLVPVVYLSANRIAPAHEGLEWESATLPLSRHLPRLVEGLSRRLRISTRSFDSLEKGDLGLVAKRAEGFQHLSPYCQGIGGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQAAKIVKQVYSVLPDYDKIVSALLKDGVWILPKTCNFTPGVPVGPMLSKATKGVSEILNKFQDAEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAVQVVKFVIELTKGGNLKEAVPHLKTKFKGIHENIRGAVLGWVEG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi999g00004 417 MobiDBLite consensus disorder prediction 19 65 - -
Sebi999g00004 417 Gene3D DNA ligase/mRNA capping enzyme 311 385 - -
Sebi999g00004 417 MobiDBLite consensus disorder prediction 1 81 - -
Sebi999g00004 417 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 100 301 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sebi999g00004 417 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 271 375 - -
Sebi999g00004 417 Gene3D - 231 268 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sebi999g00004 417 Gene3D - 93 229 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sebi999g00004 417 Gene3D - 269 310 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sebi999g00004 417 Pfam ATP dependent DNA ligase domain 311 375 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Sebi999g00004 417 Pfam DNA ligase N terminus 118 267 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sebi999g00004 417 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 335 343 IPR016059 GO:0003909
Sebi999g00004 417 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 38 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi999g00004 Sebi-Chr999 54284 57937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi999g00004 13 378 Core DNA Replication Machinery Family AT1G08130 48.009 4.12e-113 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi999g00004 K10747 - gmx:100783155 402.134