Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi998g00013 ATGGCTTCATCCCAAAAGGCAGTGCTAGTTCCTTGGTTGCTATTAATGATCTCTGCAGTGTCACAAACAATTCATCCTCGCTGCCATAATAAATGTGGAAGTGTTAACATTCCGTATCCATTTGGTACATCTGAGGACTGTTACTTAAATAACAACTTTTATGTTGCTTGCAACACAAGTTACTACCCTCCCAAACCATTTTTGTGGAATTTGACCTCAAATATTGAGATCCTACTAGTGTCATTGGATGGCCATTTGCGGATAAACTCATTTGTAGCTTATGTCTGCCATGATGAAAATGACATGCATGTGGATACAGGGAGAGCATCTATGTCTTTGCAAGCATTCCCTTTCTCAGTTACCAGAAACAAGTTCATTGGAATTGGATGTGACACCCTTTCAGTCATCAATGCAACGATTGGAAAAAATTACTCTACTGGGGGGTGTTTCTCACTTTGTAGTAGTATAGATAATTCAGCAAATGGATCTTGTTTTGGTATTGGTTGCTGCCAAACCTCTATTCCTAAAAACATTCTGAAATATGAAGCTTATGTCCTGAGCTCCAATAAGATGCAAAGGGATGTGAACAACCCTTGTAGCTACTCTCTTTTGGTAGAAGAAGACTCTTTCAATTTTTCCAAAGCTGACTTCATCAATCTACAGAATAGAAGAACTGCTCCAACAGTTCTTGATTGGTCTGTTGGGAATCAGACATGTGAAGAAGCTAAGAAGAATTTGATTCTCTATGCCTGCCAAGCAAATAGCATGTGTATTGACTCTGACAATGGACCAGGGTACCTCTGTAAATGCTCACAAGGTTATGTGGGAAATGCTTACCTTCCTGGTGGATGCCAAGATATTGATGAGTGTGCCAATCCAAGTCTAAATGATTGTTCAGATATCTGCATTAACTTAGCTGGCAGTTATAAATGTTCTTGTCCCAAGACGAAGAGGCACCGGGGAGATGGTAAAAAAGGTGGAAGTGGCTGTGTCTCTGATCTACAACGTGAGAAGCAAGTTTCCAACATAGAAGGATCAACTGATCAGACAGTCAAAATTTTTACTGCACAAGAGCTAAAGAAAGCCACTGAAAACTTTCATGAGAGCAGAATCATTGGCAGAGGAGGATATGGTACAGTTTATAAGGGAATACTTCCAAATGACCAAGTTGTTGCTATAAAGAAATCCAAACTAATAGACCACAGCCAAATTGAGCAATTCATCAATGAAGTGGTTGTACTTTCCCAAATTAACCACAGAAATGTGGTCAAACTCCTAGGTTGTTGTTTAGAGACAGAAATGCCATTGCTAGTTTATGAATTTGTGAACAATGGCACCCTCTTTGACCACATCCACAATGAAAACAATGCAGAAGCCACCACCACCACACTTTCTTGGGAAACAAGACTAAGAATAGCAACAGAAACAGCAGAGGCAGAGAGAAATTTAGCCATGTATTTCCTTTCAGCTTTGAAAAATGATTGCTTGTTTCAAATTCTTGAGGATTGTGTCAGTAATGAGGGAAATAGGGAGCAGGTGAAGGAAGTTGCTAATATTGCTGAATGGTGCTTGAAACTTAGAGGTGAGGAAAGACCCACCATGAAGGAAGTGGTCATGGAATTGGATAGTCTGAGAATGATGGCTACTACTCCACGGACTAATACCCCATCAAATGCAACAGAATATGGAATTGGTGAAAGATCAGCTCTAAAAGATTGTACTGGTAGTCATAGTCATTATACCAATGCTACATGTGTTGGGCATGAGGATGACACCATTTGCAATGACGTGATGTCACCCCTATGGGATGGCAGATGA 1818 0.4015 MASSQKAVLVPWLLLMISAVSQTIHPRCHNKCGSVNIPYPFGTSEDCYLNNNFYVACNTSYYPPKPFLWNLTSNIEILLVSLDGHLRINSFVAYVCHDENDMHVDTGRASMSLQAFPFSVTRNKFIGIGCDTLSVINATIGKNYSTGGCFSLCSSIDNSANGSCFGIGCCQTSIPKNILKYEAYVLSSNKMQRDVNNPCSYSLLVEEDSFNFSKADFINLQNRRTAPTVLDWSVGNQTCEEAKKNLILYACQANSMCIDSDNGPGYLCKCSQGYVGNAYLPGGCQDIDECANPSLNDCSDICINLAGSYKCSCPKTKRHRGDGKKGGSGCVSDLQREKQVSNIEGSTDQTVKIFTAQELKKATENFHESRIIGRGGYGTVYKGILPNDQVVAIKKSKLIDHSQIEQFINEVVVLSQINHRNVVKLLGCCLETEMPLLVYEFVNNGTLFDHIHNENNAEATTTTLSWETRLRIATETAEAERNLAMYFLSALKNDCLFQILEDCVSNEGNREQVKEVANIAEWCLKLRGEERPTMKEVVMELDSLRMMATTPRTNTPSNATEYGIGERSALKDCTGSHSHYTNATCVGHEDDTICNDVMSPLWDGR 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi998g00013 605 SMART egfca_6 286 331 IPR001881 GO:0005509
Sebi998g00013 605 Pfam Wall-associated receptor kinase galacturonan-binding 28 85 IPR025287 GO:0030247
Sebi998g00013 605 ProSitePatterns Protein kinases ATP-binding region signature. 372 395 IPR017441 GO:0005524
Sebi998g00013 605 FunFam Wall-associated receptor kinase 2 335 441 - -
Sebi998g00013 605 Pfam Protein tyrosine and serine/threonine kinase 369 479 IPR001245 GO:0004672|GO:0006468
Sebi998g00013 605 SUPERFAMILY Protein kinase-like (PK-like) 357 552 IPR011009 -
Sebi998g00013 605 ProSiteProfiles Protein kinase domain profile. 366 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi998g00013 605 Gene3D Transferase(Phosphotransferase) domain 1 345 480 - -
Sebi998g00013 605 ProSitePatterns Calcium-binding EGF-like domain signature. 286 311 IPR018097 GO:0005509
Sebi998g00013 605 Pfam Calcium-binding EGF domain 286 316 IPR001881 GO:0005509
Sebi998g00013 605 Gene3D Laminin 289 325 - -
Sebi998g00013 605 CDD EGF_CA 286 314 - -
Sebi998g00013 605 FunFam Wall-associated receptor kinase 2 237 288 - -
Sebi998g00013 605 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 480 548 IPR045274 GO:0007166
Sebi998g00013 605 Gene3D Transferase(Phosphotransferase) domain 1 481 561 - -
Sebi998g00013 605 SUPERFAMILY EGF/Laminin 285 321 - -
Sebi998g00013 605 Gene3D Laminin 236 288 - -
Sebi998g00013 605 SMART egf_5 289 331 IPR000742 -
Sebi998g00013 605 SMART egf_5 238 285 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi998g00013 Sebi-Chr998 165613 168359 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi998g00013 478 549 Receptor kinase-like Gene Family AT1G21250 41.667 3.60e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi998g00013 PK_Tyr_Ser-Thr 1.7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi998g00013 - - gmx:100797492 747.658