Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi998g00008 ATGACTGTGCGCTCAAAGCAGCAGCAGCTGCTGTTGTTGCTAGTTGCAATCCTTGTTGCATCAACTCAAACCCAACCCATGTCACTACCAAACTGCCCAACAAACTGTGGCTCCGTCACCATTCCTTTCCCATTTGGCACCACCGAGTCCTGTTCACTGGACAGCACTTTCCTCATCAATTGCAACCAAACCTCTTCAACACTACACACTCCTTTCTTAGCCCAAAGAAATCTAAGTGTGCTAAACATCTCACTCAACGGCGAGCTGCACGTAGCATGGCCAGTAGCCAGCGATTGCTACGCTCGTAAAGGCAAACAGGTGAATCAAACAGTTCAAGGTCTCAACCTGACGAATTTTCACGTCTCAAGTCGAAACAAGTTGACAGTGGTTGGCTGTGACACCATTGGATTAGTGGTGGGAAACGATTCTAAGGGAAAGAACTACACAACAGGATGCGTGTCTTTGTGCAACAGGCTTGATGATATCGAAGCCAATGGAACTTGCTCTGGCACTGGTTGTTGTGAGATTTCAATACCTCAAGGGCTTTTGAGTTTCGGCTACGTTTCTGCAAGCATTTTCAACCACACACGCGTCCTTGACTTCAATCCCTGTGGTTATACTTTTTTGGTTGAAGATGGAGCCTACAACTTTGTTTCCACAGACCTTGTCAAATTTGAAAAGACAGAGTTTCCTCTGGTGCTGGATTGGGCAATTGGGAACAAAACGTGCCTAGAAGCTCAGAAAGAGGTTTCAAGTTATGCCTGTAAGGCAGAGAATAGTGAATGTTACAATTCAATGAAGGGAGCTGGTTACCTTTGCAAATGCTCTAATGGTTTTCGGGGAAATCCTTACCTTCTTCATGGCTGTCAAGATGTTAATGAATGCATGGAATCCAACGACTGCATTGATGGGGCGATATGCAGCAATTTTCCGGGGAGCTACAATTGTTCATGCGCGGAAGGATATGAAGGAGATGGGAAAAATAATGGAACCAGATGCAGTCCTAAATCCAGTACCAATTCCAGGAGAGAGATCATCCTAATAATTGCTTTGAGTGTGAGTGTAAGCGTCTTAACCTTACTTGGGGGAAGCTTTTATGTGTATTGGGCATTGAAGAAAAGAAAGCTCATCAGGCTTAAAGAACAATTTTTTCAACAAAATGGAGGCCTATTGTTACAAAAACAGATAGCCAGACATAAAGGGTCAACTGAAATGGCCAAAGTCTTCACTATGGAGGAGCTAAAAGAGGCCACCAACAACTTTGATCAAAGCAAGGTCCTAGGCCAAGGTGGACAGGGAACAGTTTACAGAGGAGTATTGCTAGATAATAGAACGGTAGCAATAAAAAAGTCCAAAATCAGTGACCTAAACCAGATTGAGCAGTTCATCAATGAGGTCATTGTGCTTTCCCAAATCAACCATAGGAATGTGGTAAAGCTCTTGGGTTGTTGTTTAGAAACAGAAGTTCCCTTGCTTGTTTATGAGTTCATTCAGAATGGTACTGTTTATGAGCATCTTCATGATCAAAGCCAAGCTTTAAAACTTACATGGAAAACAAGATTGAGAATAGCAGCAGAAACTGCTGGAGCCTTGGCATACTTGCATTCTGCTACTTCTACACCAATCATACATAGGGATGTAAAAACTACAAACATACTACTTGATCGTAATCTCACTACAAAGGTTTCTGATTTTGGAGCTTCTAGAATTATTCCTCTTGATCAAACTCAATTAACCACTTTGGTGAAGGGTACACTAAGATATCTTGACCCAGAATACTTTCACACAAGCCAGTTAACAGAGAAGAGTGATGTCTATAGCTTTGGAGTTGTCCTAGCAGAGCTATTGACTGGAAAGAAGGCACTTTCTTTTGACAGGCCAGAGGCTGATAGAAATCTTGCAGTGTACTTTGCTTCTTCAATGAAGGAGGGTCGTTTACTTCACGTTGTAGACTGCCACATTATAGATGAGGCAAATGTTGAGCAACTAACAGAAGTTGCCAATATTGCAAAGAGGTGTTTAAGGGTGAAGGGAGAGGAAAGACCAACCATGAAAGAAGTGGCAATGGAACTTGAGGGAATAATAATTATGGAAAAGCATAGATGGGAAAGTGTCAATTTGTCTTCAGAAGAGACTGAAAGCTTGCTCAAAGCAGCACCAGTTTTCAGTTTTGTGGATGGCGCTGGTGGAAATGGCATTGCTTATGGCTTAGATAGCTTGAACTGTATTTCCATGTCGTTGAGTGGTGGAAGATGA 2256 0.4251 MTVRSKQQQLLLLLVAILVASTQTQPMSLPNCPTNCGSVTIPFPFGTTESCSLDSTFLINCNQTSSTLHTPFLAQRNLSVLNISLNGELHVAWPVASDCYARKGKQVNQTVQGLNLTNFHVSSRNKLTVVGCDTIGLVVGNDSKGKNYTTGCVSLCNRLDDIEANGTCSGTGCCEISIPQGLLSFGYVSASIFNHTRVLDFNPCGYTFLVEDGAYNFVSTDLVKFEKTEFPLVLDWAIGNKTCLEAQKEVSSYACKAENSECYNSMKGAGYLCKCSNGFRGNPYLLHGCQDVNECMESNDCIDGAICSNFPGSYNCSCAEGYEGDGKNNGTRCSPKSSTNSRREIILIIALSVSVSVLTLLGGSFYVYWALKKRKLIRLKEQFFQQNGGLLLQKQIARHKGSTEMAKVFTMEELKEATNNFDQSKVLGQGGQGTVYRGVLLDNRTVAIKKSKISDLNQIEQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFIQNGTVYEHLHDQSQALKLTWKTRLRIAAETAGALAYLHSATSTPIIHRDVKTTNILLDRNLTTKVSDFGASRIIPLDQTQLTTLVKGTLRYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALSFDRPEADRNLAVYFASSMKEGRLLHVVDCHIIDEANVEQLTEVANIAKRCLRVKGEERPTMKEVAMELEGIIIMEKHRWESVNLSSEETESLLKAAPVFSFVDGAGGNGIAYGLDSLNCISMSLSGGR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi998g00008 751 Gene3D Phosphorylase Kinase; domain 1 393 496 - -
Sebi998g00008 751 Gene3D Transferase(Phosphotransferase) domain 1 497 714 - -
Sebi998g00008 751 Pfam Protein tyrosine and serine/threonine kinase 423 691 IPR001245 GO:0004672|GO:0006468
Sebi998g00008 751 FunFam Wall-associated receptor kinase 2 241 289 - -
Sebi998g00008 751 Pfam Wall-associated receptor kinase galacturonan-binding 32 87 IPR025287 GO:0030247
Sebi998g00008 751 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 695 IPR045274 GO:0007166
Sebi998g00008 751 Gene3D Laminin 242 333 - -
Sebi998g00008 751 SUPERFAMILY Protein kinase-like (PK-like) 404 692 IPR011009 -
Sebi998g00008 751 CDD EGF_CA 291 325 - -
Sebi998g00008 751 ProSiteProfiles EGF-like domain profile. 291 334 IPR000742 -
Sebi998g00008 751 ProSiteProfiles Protein kinase domain profile. 421 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi998g00008 751 SUPERFAMILY EGF/Laminin 290 328 - -
Sebi998g00008 751 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 307 318 IPR000152 -
Sebi998g00008 751 FunFam Fibrillin 2 290 329 - -
Sebi998g00008 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672|GO:0006468
Sebi998g00008 751 FunFam Wall-associated receptor kinase 2 497 714 - -
Sebi998g00008 751 SMART egfca_6 291 334 IPR001881 GO:0005509
Sebi998g00008 751 SMART serkin_6 421 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi998g00008 751 SMART egf_5 294 334 IPR000742 -
Sebi998g00008 751 SMART egf_5 242 290 IPR000742 -
Sebi998g00008 751 FunFam Wall-associated receptor kinase 2 391 496 - -
Sebi998g00008 751 ProSitePatterns Calcium-binding EGF-like domain signature. 291 316 IPR018097 GO:0005509
Sebi998g00008 751 Pfam Calcium-binding EGF domain 291 333 IPR001881 GO:0005509
Sebi998g00008 751 CDD STKc_IRAK 427 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi998g00008 Sebi-Chr998 115111 118003 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi998g00008 6 751 Receptor kinase-like Gene Family AT1G21230 45.395 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi998g00008 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi998g00008 - - gmx:100798027 1144.41