Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi998g00006 ATGGCTGTGGCTTTGAACTCCAAGAAGCTGCTGATCATTATGCTACTACTTGTTGTGCTCCTCCTCTTCTCAGCAACAGCAGCTCAACCGTCCATGACGTCACTGCCAAACTGCCCAACAAACTGTGGCTCCGTTACCATTCCCTTCCCATTTGGCATCACGGAGGATTGTTCCCTTGATAACACGTTTCTCATAAGTTGCAACCAAACCTCTTCACCACACAGTAGTCACACAAACAGTACTCCTTTCTTGCCACAAAGTAATGTTAGTGTGTTAAACATCTCGCTCAACGGCCAACTGCAGGTTGCATGGCCAGTAGCCAGCGATTGCTATGCTGACAGAGGCATACGCGTGAATCAAACAGCTCAAGGCGTCGAACTGACGCATTTTCAAGTCTCGTCAAGTCGAAACAAGTTTACGGTGATTGGTTGTGACACGCTTGGAGTGGTGGTCGGAATCGATTCTGATGAAAGGAACTACACAACGGGATGCGTGTCTTTGTGCAACAGACTTGATGATATCGTAGCTAATGGGTCTTGCTCCGGCACTGGTTGTTGTGAGACTCCAATACCCCAAGGGCTATCGGCTGTCGGTTATGCTTCTGGGGCTGTGAATAACCACACAAACGTGCTTGCCTTCAATCCATGCGGTCATGCTTTTCTTGTGGAGGATGGAGCTTACGACTTTGTTTCCACGGACCTCGTCAAGTTTGACAAGACAGAGTTTCCTGTGGTTCTGGATTGGGCAATTGGGAACAAAACGTGCCAACAAGCTCAGAAAGAGGCTTCAAGTTATGCCTGTAAGGCAGACAACAGTGAGTGTTACAATTCCTTTCACGGACCAGCTGGTTATCTTTGCAACTGTTCTCATGGATTTCGGGGAAACCCTTACCTCCTTCATGGTTGCCAAGGTGTGAGTGTAGGCATTATAACACTACTAGTGGGATGCTTTTATGTGTACTGGGCATTGAAGAAAAGAAAGCTCATCAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGTCTATTGTTACAACAACAAATAGCCAGGCATAGAGGGTCAACTGAAACAACTAAAGTCTTCACTGAAGAAGAGCTAAGAGATGCTACCAATAACTTCGATGAAGGAAAGATCCTAGGCCAAGGTGGACAGGGAACAGTTTACAAGGGAGTATTATTAGACAATAGAATTGTAGCAATAAAAAAGTCCAAAATCAGTGACCCGAAACAAATTGAGCAATTTATCAATGAGGTCATCGTGCTTTCTCAAATCAACCATAGGAATGTGGTAAAGCTCTTGGGATGTTGTTTAGAGACAGGAGTTCCCTTGCTTGTTTATGAGTTCATTCACAATGGTACTGTTCATGAGCATCTTCATGATCAAATCCAAGCTTTAAAACTTACATGGAAAACAAGATTGAGAATAGCAACAGAAACTGCTGGAGCCTTGGCATACTTGCATTCTGCTACTTCAACACCAATCATACATAGAGATGTGAAAACTACAAACATACTACTTGATCGTAATCTCATTGCAAAGGTTTCTGATTTTGGAGCTTCTAGAATTGTCCCTCTTAATCAAAGTCAGTTAACTACTTTGGTGCAAGGAACACTGGGGTATCTTGACCCAGAATACTTCCAAACAAGCCAGTTAACTGAGAAGAGTGATGTCTATAGCTTTGGGGTTGTCTTAGCAGAGTTACTGACAGGAAAAAGGGCACTCTCTTTTGACAGACCAGAGGCAGATAGAAACCTAGCATTGTACTTCGTTTCTTCAATGAAAATGGGCCAGTTACTTCACATTTTGGATAGTCACATAATAGATGAGGCAAATATTGAGAAACTAATGGAAGTTGCCAATATTGCAAAACAATGTTTAAAGGTGAAGGGAGATGAAAGACCTACCATGAAAGAAGTGGCAATGGAACTTGAGGGAATAATGGCCATGGAAAAGCACCGATGGGGAAGTGTTAATTTGTCTTTAGAAGAGACTGAAAACTTGCTTAAAGAAGCGCCATCTGTTTTCAATATTGAAGACGGTGTTAGTGGAAATGGCACTAGTTCTTCTGGCTTTGATAGCATGAGTCGTATTTCAATGTCATTGGGTGGTGGAAGATGA 2118 0.4278 MAVALNSKKLLIIMLLLVVLLLFSATAAQPSMTSLPNCPTNCGSVTIPFPFGITEDCSLDNTFLISCNQTSSPHSSHTNSTPFLPQSNVSVLNISLNGQLQVAWPVASDCYADRGIRVNQTAQGVELTHFQVSSSRNKFTVIGCDTLGVVVGIDSDERNYTTGCVSLCNRLDDIVANGSCSGTGCCETPIPQGLSAVGYASGAVNNHTNVLAFNPCGHAFLVEDGAYDFVSTDLVKFDKTEFPVVLDWAIGNKTCQQAQKEASSYACKADNSECYNSFHGPAGYLCNCSHGFRGNPYLLHGCQGVSVGIITLLVGCFYVYWALKKRKLIKLKEQFFQQNGGLLLQQQIARHRGSTETTKVFTEEELRDATNNFDEGKILGQGGQGTVYKGVLLDNRIVAIKKSKISDPKQIEQFINEVIVLSQINHRNVVKLLGCCLETGVPLLVYEFIHNGTVHEHLHDQIQALKLTWKTRLRIATETAGALAYLHSATSTPIIHRDVKTTNILLDRNLIAKVSDFGASRIVPLNQSQLTTLVQGTLGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTGKRALSFDRPEADRNLALYFVSSMKMGQLLHILDSHIIDEANIEKLMEVANIAKQCLKVKGDERPTMKEVAMELEGIMAMEKHRWGSVNLSLEETENLLKEAPSVFNIEDGVSGNGTSSSGFDSMSRISMSLGGGR 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi998g00006 705 Gene3D Transferase(Phosphotransferase) domain 1 449 664 - -
Sebi998g00006 705 Pfam Wall-associated receptor kinase galacturonan-binding 38 99 IPR025287 GO:0030247
Sebi998g00006 705 MobiDBLite consensus disorder prediction 679 696 - -
Sebi998g00006 705 Pfam Protein kinase domain 374 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi998g00006 705 FunFam Wall-associated receptor kinase 2 343 448 - -
Sebi998g00006 705 Gene3D Phosphorylase Kinase; domain 1 347 448 - -
Sebi998g00006 705 FunFam Wall-associated receptor kinase 2 449 666 - -
Sebi998g00006 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Sebi998g00006 705 CDD STKc_IRAK 379 646 - -
Sebi998g00006 705 MobiDBLite consensus disorder prediction 679 705 - -
Sebi998g00006 705 SUPERFAMILY Protein kinase-like (PK-like) 357 647 IPR011009 -
Sebi998g00006 705 ProSiteProfiles Protein kinase domain profile. 373 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi998g00006 705 SMART serkin_6 373 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi998g00006 705 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 647 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi998g00006 Sebi-Chr998 72321 76117 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi998g00006 11 698 Receptor kinase-like Gene Family AT1G21230 42.707 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi998g00006 Pkinase 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi998g00006 - - gmx:100798027 992.26