Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi997g00004 ATGAGAACCCCCTGCTGTGACAAAAATGGACTGAAGAAAGGAACATGGGCACCAGAGGAGGACAAGAAGTTGGTTGATTATGTTACCAGATATGGCCACTGGAATTGGCGCCTACTACCCAAGTTTGCAGGACTTGCGAGATGCGGAAAGAGTTGCAGACTTAGGTGGCTGAATTACCTAAGGCCAAATGTTAAAAGAGGGAACTATACTCAACAAGAGGAGGAAACTATTATCAAGCTCCACCAACTATTGGGTAACAGATGGTCTGCCATTGCTGCTGAGATGCCAGGAAGAAGTGACAATGAAATAAAAAACTACTGGCACACCAACCTCAAGAAGCGATTTCAACACAACTCAGTCACAGAAGCTCAAGACTCTGATCAGTCAAAGGATGATGATGACTCCTCAACTGAAACTGCAAACAATTACGTGACTGCAGTTAATACCACCCAAATCGCCGAGACTTCCTCATTTTCCCACCATTCATCCTCCTCTGCAAGCACAGAGTACTGCAACACTACTACCACTACCAGCAATGAAAATCTGACTCTGGAAGATGAATTTGCCTTTCTAGATGCAGACAATTTATTAGATCCCGTGAGTGAAAGCTTCTGGTTAGAGCCATATATGTTTGACATTAGCTATGTCCCAAGTGAGCCTGAGGATTTTAGCCCAATCTTTGATGCGGAACTTTGGAGTCATATATGA 708 0.4379 MRTPCCDKNGLKKGTWAPEEDKKLVDYVTRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNVKRGNYTQQEEETIIKLHQLLGNRWSAIAAEMPGRSDNEIKNYWHTNLKKRFQHNSVTEAQDSDQSKDDDDSSTETANNYVTAVNTTQIAETSSFSHHSSSSASTEYCNTTTTTSNENLTLEDEFAFLDADNLLDPVSESFWLEPYMFDISYVPSEPEDFSPIFDAELWSHI 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi997g00004 235 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Sebi997g00004 235 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Sebi997g00004 235 Gene3D - 68 141 - -
Sebi997g00004 235 CDD SANT 68 111 IPR001005 -
Sebi997g00004 235 FunFam Transcription factor RAX3 6 66 - -
Sebi997g00004 235 CDD SANT 15 60 IPR001005 -
Sebi997g00004 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Sebi997g00004 235 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Sebi997g00004 235 MobiDBLite consensus disorder prediction 118 138 - -
Sebi997g00004 235 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 181 - -
Sebi997g00004 235 SMART sant 12 62 IPR001005 -
Sebi997g00004 235 SMART sant 65 113 IPR001005 -
Sebi997g00004 235 Gene3D - 12 65 - -
Sebi997g00004 235 MobiDBLite consensus disorder prediction 155 174 - -
Sebi997g00004 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Sebi997g00004 235 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Sebi997g00004 235 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi997g00004 Sebi-Chr997 150862 152943 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi997g00004 2 219 MYB Transcription Factor Family AT1G06180 46.789 7.95e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi997g00004 Myb_DNA-binding 9.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi997g00004 K09422 - gmx:100778518 311.612