LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi996g00007	ATGAACAACAATTATAGTGATAGAGGCAATGATAGTTCTGATGAAAGTCATAGTGAAGATAACAATGATGTGGGTAATCAGAATGAGGCAGTGGAAGAAGATTTAACATATGAACAGTATAAAAGTATAATAGACCTAACTGCGAATGACGTTCGAGGTATGGAGTTTGGTAGTGACGAGCATACATGTAAATTTTATGATTCATATGCTAGGTGTCATGGCTTTGTTGCAAGAAAAGATGATATAAAACGTGATGCGAAAGACAATATTATAATGCGTCAATTGGTTTGCAACAAAGAGAGGTTGAGAAATAAAAAGCACTTTATAAGGTTGGATAGAAAGAGACCTCATAGGCCAATCACTCGTACTAGTTGTCAAGCTAAGCTTAGAGTACACTTTGATTACAAGAGATCAAAATGGACAGTCTTGTCCTTTGTGGAGACTCATAATCATTATTTATGTCCACCAAAATATAGACACTTAATCCCTGCACATCGCAAGATGGGTGATACAGATAAAGCTCAAGCGGAAAGTTTGCATTCCTATGGAGTTAGGACTTGTCACATTATGGGATATATGTTGGCTCAGAAAGGTGGGTATAGTGCTTTAGGGTTTACCAAAAAGGATATGTACAATTATTTTAGTGAGAAAAACCGTGAGAAGATCAAAGATGGGGATGCATGCATTGCATTAAGTTATTTACAAGGCAAGGCAGATAATAATGGATTGATGCATTCATCATATTCATTTACAAGTGATGGGGATTTCAAGACTGCAATGTCAGAACCTGTGCTAACCACTTCTCTTTACAAGATTGAGCGTGATGCTTCAAAAATTTTCACCCAAGAGATTTTTAAGGATGTTAAATCTGAAATTGAAGCTGCTGGTGCCTTGAATGTTATTGAACGTGTGATAAATGGTGAGAAATTAATATTGAAGATGAACAAATATTGTGATATTGGAAGTGAATTTGTTGTTGATTATGATACTGTGAACTGTAATTTTTTCTGTGAATGCAAACTATTTGAATCTCGTGGCATTCCATGTGCTCATATTATATGTGCCATGAAAAATGAGCACATAGACTCCATTCCTAGCAGTTTGATATGCAAACGGTGGACAAAAACTGCGAAGAGTGATATTATTTCTGCAAGTCGATTGGATGATTTAGATTCTGATGTCATGTCTGGGGCCCGTGTTGGGGCTGCAGCTGCTGCTTGTAATAGATTATGCAGTATTGCTAGAGAGAAGAATGCATGTTTCAATGATATTTTAAATGATATCTTTAAGCTGCTTAATAAGTATGAGAATCAAGGGGATCCAAACAACACAGTTAGGTCATCTTTTAAGGATGTGGGTGATCCATATTTAGTGAAAACAAAAGGTGCTCCATCCAAGAAAAAGTACGGAAGGAAGAGGAGATGTTCAAATTGTAGTAGACCTGGACACATAGCTAGGAAATGTCCTAGGCTCCTTTCCACGGATGATCAAGTTCCTATGGATGGTGATTCTTCACATTCAGATGGTGATGGTTTCACAATAGGAGAAGAAAATGATAAAGAAGGAAATCCCGTTGATCAATGTGATGACCAGCAAATTGGGTCTAAAAATCAGTCAAGAATGAGGAAAGATAATAATGTAAAAGGGAAAGGTACTGGTTCTTTCAAAATGAAGGAGAAAACGGTAAATCGGTCAACACATAATTCAGTGAAGCAGCCTAAAATTGAACCTATGGTTTCTTCAAGTGATGCTAATGCTGACAATCCCCAACACCAAAATTCAAACCCTGTTTATGCAACAACCAGCGAAGGAGTTAATATATCACCTCATCATGGTGAGGGGGACCCTATAATTCCATTGGGTTCTTTAAATGGAGTTAATACCCTTTATCCCCAAAGGGTGTGTGTGTTACCCCAACAGCAAAACTTTACAAATGTTTATGGACCAATAAGCCAGGGAGCTAATATCTTACCTCATCACGATGGAGTTTCTATTAACCCTCAAGTTCCCCAAGTTGCATTTTTTCCTCAAAGGCCTCAGAATATAGGTATGTCTTGGAATGAGTTGTTGGAAGAGGTCACTAAAAATGGAGGTGTTAAGCATGGCAATCCATCATGA	2118	0.3749	MNNNYSDRGNDSSDESHSEDNNDVGNQNEAVEEDLTYEQYKSIIDLTANDVRGMEFGSDEHTCKFYDSYARCHGFVARKDDIKRDAKDNIIMRQLVCNKERLRNKKHFIRLDRKRPHRPITRTSCQAKLRVHFDYKRSKWTVLSFVETHNHYLCPPKYRHLIPAHRKMGDTDKAQAESLHSYGVRTCHIMGYMLAQKGGYSALGFTKKDMYNYFSEKNREKIKDGDACIALSYLQGKADNNGLMHSSYSFTSDGDFKTAMSEPVLTTSLYKIERDASKIFTQEIFKDVKSEIEAAGALNVIERVINGEKLILKMNKYCDIGSEFVVDYDTVNCNFFCECKLFESRGIPCAHIICAMKNEHIDSIPSSLICKRWTKTAKSDIISASRLDDLDSDVMSGARVGAAAAACNRLCSIAREKNACFNDILNDIFKLLNKYENQGDPNNTVRSSFKDVGDPYLVKTKGAPSKKKYGRKRRCSNCSRPGHIARKCPRLLSTDDQVPMDGDSSHSDGDGFTIGEENDKEGNPVDQCDDQQIGSKNQSRMRKDNNVKGKGTGSFKMKEKTVNRSTHNSVKQPKIEPMVSSSDANADNPQHQNSNPVYATTSEGVNISPHHGEGDPIIPLGSLNGVNTLYPQRVCVLPQQQNFTNVYGPISQGANILPHHDGVSINPQVPQVAFFPQRPQNIGMSWNELLEEVTKNGGVKHGNPS	705

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi996g00007	705	SMART	26again6	335	362	IPR006564	GO:0008270
	Sebi996g00007	705	MobiDBLite	consensus disorder prediction	566	596	-	-
	Sebi996g00007	705	MobiDBLite	consensus disorder prediction	456	596	-	-
	Sebi996g00007	705	MobiDBLite	consensus disorder prediction	541	565	-	-
	Sebi996g00007	705	MobiDBLite	consensus disorder prediction	1	32	-	-
	Sebi996g00007	705	MobiDBLite	consensus disorder prediction	464	480	-	-
	Sebi996g00007	705	ProSiteProfiles	Zinc finger CCHC-type profile.	473	490	IPR001878	GO:0003676\|GO:0008270
	Sebi996g00007	705	Gene3D	-	458	529	-	-
	Sebi996g00007	705	Pfam	Zinc knuckle	474	489	IPR001878	GO:0003676\|GO:0008270
	Sebi996g00007	705	ProSiteProfiles	Zinc finger SWIM-type profile.	324	360	IPR007527	GO:0008270
	Sebi996g00007	705	MobiDBLite	consensus disorder prediction	510	526	-	-
	Sebi996g00007	705	SUPERFAMILY	Retrovirus zinc finger-like domains	465	494	IPR036875	GO:0003676\|GO:0008270
	Sebi996g00007	705	SMART	c2hcfinal6	474	490	IPR001878	GO:0003676\|GO:0008270
	Sebi996g00007	705	PANTHER	OS01G0519700 PROTEIN	253	475	-	-
	Sebi996g00007	705	Pfam	FAR1 DNA-binding domain	64	154	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi996g00007	Sebi-Chr996	71330	74646	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Sebi996g00007		FAR1	2.9e-18	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi996g00007	-		-	ccaj:109792835	280.411