Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi994g00001 ATGGGAAGAGCACCTTGTTGTGACAAGAATGGCCTCAAGAAAGGACCATGGACACCAGAGGAAGACCAGAAACTCATTGATTACATTCAGAAACATGGGTATGGCAATTGGAGATTACTCCCCAAAAATGCTGGATTGCAAAGGTGTGGAAAAAGTTGCCGTCTCCGTTGGACAAACTATCTCCGACCAGATATAAAGCGAGGTCGATTCTCTTTTGAAGAGGAAGAGACAATTATACAGCTACATAGCATTCTTGGCAACAAGTGGTCTACTATTGCATCTCGATTGCCAGGAAGGACAGACAATGAAATCAAGAATTACTGGAACACACACATTAGAAAAAGGCTTTTAAGGATGGGAATTGATCCTGTCACACATAGTCCACGCCTTGATCTATTAGACCTTTCTTCCATCCTAACTTCATCTCTCTATGGCTGCTCATCTTCACAAATCAACATTCAAAGGCTTATTGGTACTCAACCATTGGTGAACCCTGAGATTCTAAAGTTGGCTTCATCACTCTGCAGTAATTCCCAAATTCAGAACCAACAAATCCCTCATCACTTTGTTCAGAGTCAGGACTCTGCTCATCATCAACAACAAGTACTGTCTGAAACAGGTTGTAACACATTGAATATTATTAATCCCTCGTTGCCTTTCACTCAACCACTACTTGAATCTGAGTCCAATGTGAACACATACCCATCAAATTTCCCCGATTTTAGCTTCCAACAACATTCTCAGCAGAGTGATTGGTATTGCAATAATGGGATTGGGATTGCTTCAAGCACTATAACAGAGGATTATGTCCCTCAATTACCAAGCTATGATTACTATAGTTCTGATTATCATGCAAATAATAATGATTTTATGGACCCTCCAATTTCAGAAACCTCAACTTTCCATTCCAATAACACCAACCCCGACATGGGTTTTGCTTCAGTTCTATCGACACCTTCTTCGTCAAGTCCCACACCGCTGAACTCAAACTCGACGTATATCAATGGAAGCAGTACGGAGGATGAGACGGAAAGCTATGTGAGCAGCAACTTATTGAGATTTCAAATCCAAGAAATCTTAGGTGTGATGTGA 1092 0.4103 MGRAPCCDKNGLKKGPWTPEEDQKLIDYIQKHGYGNWRLLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSTIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILTSSLYGCSSSQINIQRLIGTQPLVNPEILKLASSLCSNSQIQNQQIPHHFVQSQDSAHHQQQVLSETGCNTLNIINPSLPFTQPLLESESNVNTYPSNFPDFSFQQHSQQSDWYCNNGIGIASSTITEDYVPQLPSYDYYSSDYHANNNDFMDPPISETSTFHSNNTNPDMGFASVLSTPSSSSPTPLNSNSTYINGSSTEDETESYVSSNLLRFQIQEILGVM 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi994g00001 363 Gene3D - 13 66 - -
Sebi994g00001 363 FunFam Transcription factor MYB39 69 130 - -
Sebi994g00001 363 CDD SANT 69 112 IPR001005 -
Sebi994g00001 363 FunFam MYB-related transcription factor 13 66 - -
Sebi994g00001 363 CDD SANT 16 61 IPR001005 -
Sebi994g00001 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 251 - -
Sebi994g00001 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sebi994g00001 363 SMART sant 66 114 IPR001005 -
Sebi994g00001 363 SMART sant 13 63 IPR001005 -
Sebi994g00001 363 Gene3D - 69 116 - -
Sebi994g00001 363 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi994g00001 363 MobiDBLite consensus disorder prediction 314 341 - -
Sebi994g00001 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Sebi994g00001 363 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi994g00001 363 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Sebi994g00001 363 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sebi994g00001 363 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi994g00001 Sebi-Chr994 7905 9229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi994g00001 1 362 MYB Transcription Factor Family AT4G21440 54.617 2.25e-119 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi994g00001 Myb_DNA-binding 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi994g00001 K09422 - gmx:778071 435.261