LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi993g00008	ATGACAACAAACACTGAGGAGTCATGTATGAACAATGTTGATGGTGAAAATGAGGTATCTCGTGACATTGAACATATGGATGAATATTATGACCATGGTGGGAGTTCAGATGATGTTGGTGAAGGCATACATTATGGCAATGAAGGTGGTCATTTATGTGAGGAAAATGGGGAAGATGTTGAAGATGAAGAGGATGGAGAGGATGGTGAAGATTGGGATGAAGGAGAAGAAGATGGGGAGGATGGTGAGGAAGAAGATGGTGAAGAAGATGAAGATGGTGAAGAAGATGAGGATGGCATGGATTCAAATGCAAAATTTGTACACAGTGATGGAAGTAATGATATTGCAATTAATGGTTTGGAGGACATGGGCATTATTAAATTCAAACACTTGACTCCAGATGAGGCAATGAGATATCACTTTCCATATCGTGAGGTTGCCTTTCAGTTTTACAGGTTCTATGCACGGATGAATGGATTTTCAGCTCGCAAAGACAGGACTGTACGTAACAAGAATTTAGAAGTAATTCAACAAACATTTGTCTGCTATAGGGAAGGGAAGAGAACAGAAAATTTTAGAAAAGGGAAAAAAACCGGAAACGTCAAGCAAGGAAAACAACAAGGTGTGAGTGTAAAGCCAAATGTCAAGTTCATATATACCATGGCAATAACCGATGGTGCATGTTGGGAGACTATGAGATTGGTGAATTTGAGACAAAGTGGAATGATATGGTTTGAAGAATGTGGTCTTGGAAACAATGACTGGGTCAGGGAGTTGTATGACAGGAGGCAGATGTGGGCCACTGCACATATTCGTGGCATTAGAGAGGTGGACAAAGAAAGAAAGGGATCAGTTTATGATGTAGAGTCTGCTTGTGGTGATCCAATTAAGACTGAGCCAATCTCAAGGAAAGGCCTAGAGCAAGGCGCAACAATCGTTGTGGTCATTGTGGGGGTGAAGGCCATAATAGAACCACTTGTGTATTTCGGAGACAAAGGGATGAGGGTGGAGCAGGAGTTTTTGGAGACAATGACTTTGATGATGAAGCAATACACTAGTCGGGGTTGGCCTTCATGGATATCAATTTAG	1089	0.4151	MTTNTEESCMNNVDGENEVSRDIEHMDEYYDHGGSSDDVGEGIHYGNEGGHLCEENGEDVEDEEDGEDGEDWDEGEEDGEDGEEEDGEEDEDGEEDEDGMDSNAKFVHSDGSNDIAINGLEDMGIIKFKHLTPDEAMRYHFPYREVAFQFYRFYARMNGFSARKDRTVRNKNLEVIQQTFVCYREGKRTENFRKGKKTGNVKQGKQQGVSVKPNVKFIYTMAITDGACWETMRLVNLRQSGMIWFEECGLGNNDWVRELYDRRQMWATAHIRGIREVDKERKGSVYDVESACGDPIKTEPISRKGLEQGATIVVVIVGVKAIIEPLVYFGDKGMRVEQEFLETMTLMMKQYTSRGWPSWISI	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi993g00008	362	MobiDBLite	consensus disorder prediction	1	15	-	-
	Sebi993g00008	362	MobiDBLite	consensus disorder prediction	1	111	-	-
	Sebi993g00008	362	Pfam	FAR1 DNA-binding domain	149	199	IPR004330	-
	Sebi993g00008	362	MobiDBLite	consensus disorder prediction	17	38	-	-
	Sebi993g00008	362	PANTHER	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	52	197	-	-
	Sebi993g00008	362	MobiDBLite	consensus disorder prediction	55	99	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi993g00008	Sebi-Chr993	194621	197294	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Sebi993g00008		FAR1	5.7e-08	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi993g00008	-		-	tpra:123915148	108.997