Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi993g00007 ATGATGTCTTCAGGGACATCTTCATATTGGTGCTACAGGTGCAGTCGGTTCGTGAGGGTCTGGAGACAGGACACGGTGGTTTGCCCTGATTGCGACGGTGGATTCATCGAGGAGATTGAACATCCGGCACGCTCAGTCCACGTGGATGGCCGGCGGCGAAGGTTTCCGGCGGCGGCGATGTACATGATCGGCCAACGCCCCGGTTCCGACCAAAACTCTCGCCCTGCTGCTCTCCGGCGAACCCGCCGGAACGGCGGTGACCGGTCGCCTTTCAATCCGGTGATCGTCCTCCGTGGCGGTGGATCGGCGGAGGGTACTGAAGGAGAGGGTCGTGGGTTCGAGCTTTTCTATGATGACGGTGCTGGTTCTGGTCTTAGGCCTTTGCCTCCAAGCATGTCAGAGTTTCTTCTGGGATCTGGATTTGATAGATTATTGGAACAGCTTTCTCAGATTGAGATCAACGGTATTGGGAGGTACGAGCACCCTCCTGCATCAAAAGCTGCTATTGATTCATTACCCACTATTGAGATTGATGAGAGTCATTTGGCCATGGAATCTCACTGTGCTGTTTGTAAAGAGCCTTTTGAGTTGGGAACCGCAGTGAGGGAAATGCCTTGTAAGCACATATACCATTCTGAATGTATCTTGCCATGGCTTGCACTTCACAATTCTTGCCCTGTTTGTCGCCATGAGTTGCCTGCTGATGCACCAAATCCACCCCCAACAGGGCAATCCCTTGCCTTGAATGAGGAAGAAAATGTGGGGTTAACTATTTGGAGGTTACCTGGTGGTGGCTTTGCAGTGGGGAGGTTTTCTGGTGGGAGAAGAGGTGCTGAGAGGGAACTTCCTGTTGTTTACACTGAAATGGATGGTGGTTTAACAATGGGGGTGAGCCTAGGAGGATTTCTTGGTCTTCAAGGGGGAATAGAGGAAGAGAGAGTGGTGGGTTTCAAAGGTTGTTCAGGAATTTGTTTGGTTGTTTCAGAGGTGGGAGTGGAAGTGGAACTCAACACTCTAGTTCTAGTAGAGGAGAATCTAGAACTTTAA 1047 0.511 MMSSGTSSYWCYRCSRFVRVWRQDTVVCPDCDGGFIEEIEHPARSVHVDGRRRRFPAAAMYMIGQRPGSDQNSRPAALRRTRRNGGDRSPFNPVIVLRGGGSAEGTEGEGRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDESHLAMESHCAVCKEPFELGTAVREMPCKHIYHSECILPWLALHNSCPVCRHELPADAPNPPPTGQSLALNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGLTMGVSLGGFLGLQGGIEEERVVGFKGCSGICLVVSEVGVEVELNTLVLVEENLEL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi993g00007 348 MobiDBLite consensus disorder prediction 65 107 - -
Sebi993g00007 348 Pfam Protein of unknown function (DUF1117) 254 294 IPR010543 -
Sebi993g00007 348 Pfam zinc-ribbon 7 39 IPR039525 GO:0061630
Sebi993g00007 348 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Sebi993g00007 348 SMART ring_2 188 228 IPR001841 -
Sebi993g00007 348 FunFam E3 ubiquitin-protein ligase RING1-like 150 235 - -
Sebi993g00007 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 233 - -
Sebi993g00007 348 CDD RING-H2_RNF126-like 188 229 - -
Sebi993g00007 348 Pfam Ring finger domain 187 229 IPR001841 -
Sebi993g00007 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Sebi993g00007 348 SUPERFAMILY RING/U-box 168 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi993g00007 Sebi-Chr993 165858 166904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi993g00007 125 235 C3H Transcription Factor Family AT5G01980 42.342 2.35e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi993g00007 K11982 - gmx:100807324 529.635