Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi990g00008 ATGGCTCCTGCCACCTCATCTACGGCGTCGCACAGGCTCGTTGGCTTCAGTCGTCGCACGCATGCGCCGCGCCATCCACAGCGGTCGTATGCGCCGCCGATTAAGAAGTACAGGTCGATGAAGGACATAATGGAGAGGGCGCGCTATGTCGTGGTGGAACGTGAGGATTATAGCCACCTGACCTGCGACCAATGTCGATCCGATGAGAGGGCGGAGGAGTTGCTTTTGTGCGACAAATGCGACAAAGGCTTCAACATGAAATGTGTGAGGCCCATCGTCGTGAGGGTACCAAATGGATCTTGGCTTTGCCCTAAGTGTTCGGGAGGGAAGAGAGTGAGAAGTAAGGGATTGTCGAAACATGGTTTATTTATTTTTTATTTTTCTGTCGAGTTGTTTTCTCAACCGTGA 408 0.5196 MAPATSSTASHRLVGFSRRTHAPRHPQRSYAPPIKKYRSMKDIMERARYVVVEREDYSHLTCDQCRSDERAEELLLCDKCDKGFNMKCVRPIVVRVPNGSWLCPKCSGGKRVRSKGLSKHGLFIFYFSVELFSQP 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi990g00008 135 Pfam PHD-finger 62 107 IPR019787 -
Sebi990g00008 135 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Sebi990g00008 135 SMART PHD_3 61 107 IPR001965 -
Sebi990g00008 135 MobiDBLite consensus disorder prediction 1 31 - -
Sebi990g00008 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 118 IPR013083 -
Sebi990g00008 135 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 61 115 IPR047171 GO:0006338
Sebi990g00008 135 SUPERFAMILY FYVE/PHD zinc finger 51 111 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi990g00008 Sebi-Chr990 164763 165170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi990g00008 57 122 C2H2 Transcription Factor Family AT3G01460 33.333 4.03e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi990g00008 PHD 1.2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi990g00008 K24406 - qsa:O6P43_023354 159.458