Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi990g00007 ATGGCTCCTGCCACCTCATCTGTGGCGTCGCATAGGCTCGTTGGCTTCAGTCATCGCACGCATACGCCGCGCCATCCACAGTGGCCATATGCGCCGTCGATTAAGAAGTACAGGTCGATGAAAGACATAATGGAGAGGGCGCGCTATGTCGTGGTGGAATGTGAGGATTATAATGACCTGACCTGCGACCAATGTCGATCCGATGAGAGGGCGGAGGAGCTGCTTTTGTGCGACAAATGCGACAAAGGCTTCCACATGAAATGTGTGAGGCCCATCGTCGTGAGGGTACCGAATGGATCTTGGCTTTGCCCTAAGTTTCTCTCAGAAGAAGACAACTGA 339 0.531 MAPATSSVASHRLVGFSHRTHTPRHPQWPYAPSIKKYRSMKDIMERARYVVVECEDYNDLTCDQCRSDERAEELLLCDKCDKGFHMKCVRPIVVRVPNGSWLCPKFLSEEDN 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi990g00007 112 SUPERFAMILY FYVE/PHD zinc finger 26 106 IPR011011 -
Sebi990g00007 112 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Sebi990g00007 112 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 59 110 - -
Sebi990g00007 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 112 IPR013083 -
Sebi990g00007 112 SMART PHD_3 61 107 IPR001965 -
Sebi990g00007 112 Pfam PHD-finger 62 105 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi990g00007 Sebi-Chr990 158116 158596 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi990g00007 29 104 C2H2 Transcription Factor Family AT3G01460 28.235 8.68e-10 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi990g00007 PHD 1.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi990g00007 K24406 - qsa:O6P43_023354 156.377