Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi98g00047 ATGAGCTTCCAAGACATCGAAGCTGGCCGATCTTTCGGTTCGAGGCGTGGACCGATCAACGGGAAGCAAGACCCTACGCAAGCGGTGGCTGCCGGAATATTCCAGATCAACACGGCCGTGTCCACGTTTCATAGGCTCGTCAACACCATCGGAACCCCTAAAGACACCCCAGAGCTCCGCGAGAAGCTCCACAAGACAAGACTACATATTGGGCAGTTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCTAGTGACATTGATCACCATGTTGGAGTTAATGCAAGCAAGAAGATAGCAGATGCTAAACTTGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCTTACACTCCTTTTGTTCCGCAAGCAGTTCTTCCATCAAGCTATACAGCTAGTGAAGTAGATGTTGGTTCTGATAAGACTCCAGAACAGCAAGCCCTTCTCGTGGAATCCAGGAGGCAGGAGGTTTTATTTTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTCAATGAGATTTTCAAAGATCTTGCTGTTCTTGTTCATGAGCAAGGAGCCATGATTGATGATATTGGTTCCAACATTGAGAACTCCCATGCAGCTACTGCACAAGCAAAATCTCAACTTGCAAAAGCGTCAAAAACACAAAGATCAAATTCATCTTTGGTAATATATAATTTCTCTAATTGCAATTGTATCACTTTTCATAAGTCTTAA 807 0.4362 MSFQDIEAGRSFGSRRGPINGKQDPTQAVAAGIFQINTAVSTFHRLVNTIGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHVGVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDVGSDKTPEQQALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLVIYNFSNCNCITFHKS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi98g00047 268 CDD SynN 23 148 IPR006011 GO:0016020
Sebi98g00047 268 PANTHER SYNTAXIN 26 252 IPR045242 -
Sebi98g00047 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Sebi98g00047 268 CDD SNARE_Qa 200 241 - -
Sebi98g00047 268 Gene3D - 173 265 - -
Sebi98g00047 268 SMART SynN_4 14 127 IPR006011 GO:0016020
Sebi98g00047 268 FunFam Syntaxin-22 like 173 264 - -
Sebi98g00047 268 MobiDBLite consensus disorder prediction 1 24 - -
Sebi98g00047 268 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Sebi98g00047 268 FunFam Syntaxin-22 like 20 133 - -
Sebi98g00047 268 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Sebi98g00047 268 SMART tSNARE_6 175 242 IPR000727 -
Sebi98g00047 268 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Sebi98g00047 268 Gene3D - 20 133 - -
Sebi98g00047 268 Pfam SNARE domain 217 255 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi98g00047 Sebi-Chr98 1780682 1784167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi98g00047 1 253 SNARE and Associated Proteins AT5G46860 77.075 1.01e-139 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi98g00047 - - gmx:547656 414.846