Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi98g00041 ATGTCTTCGGCGCCGAACCCGGAGTTCGACACGGCACCGGCCACTGTAGCATACAACACCCCACCGGCATTGATAGCATTTACCCTAGCGGTCCTGGTTCTGTGCTTCGTGGCTTTCAGCATTGTGTACTTGTGCAAGCATTGTTTTTCAAACGTTATCCACACTTGGGAGTTTCAACGCACTGCCTCAGGCTCCATCATTCGTTTCGCACCTCACACGTCACCCCCTAGAGGCCTCGACCCTTCGGTTCTGGAGGGCTTCCCCACCTTTTTATATGCCTCTGTGAAGGACCTCCGCAAGGAGAAGCACAGCCTGGAATGCGCCATTTGCTTGCTAGAGTTCGAGGACGACAGCATGCTTCGCTTCTTGACTGTTTGCTGCCATGTCTTCCACCAAGAATGCATTGACCTTTGGCTTCGTTCCCACAAGACATGCCCCGTTTGTCGAGCCGACCTTGATTCAATGCCAAAATGTGAGGAGGAGAACAACAACCATAATGCACTGCAGGAGCCCTCCTGCACTGATGACAACATACGCATTGATGTCAAACAAGGTGATGCCAGCGCTGGAGATCAAAGCCAACATCAACATCAAAGTATGAACATGCAGCAAAGGGAAGAACAGAGGTTTGCAAGGTCACACTCAACTGGACATTCCATAGTTATGATTAGAGGAGGAGGAGGAGATGAAGAAAAAGAAGATGATAAATATACCTTGAGATTGCCCGAACATGTCATAAGAGGATGGCACAACAACTGCACCAGGAGTTGTAGAAGTTGCAGGGAGATGATTGGGCCTGAACCTTGTACTAATTGTGCCTTTCTTCAACCCCTATCTGCCTCCTCTCCCCTTGGCCATGCTCAACAATCTTGA 873 0.4971 MSSAPNPEFDTAPATVAYNTPPALIAFTLAVLVLCFVAFSIVYLCKHCFSNVIHTWEFQRTASGSIIRFAPHTSPPRGLDPSVLEGFPTFLYASVKDLRKEKHSLECAICLLEFEDDSMLRFLTVCCHVFHQECIDLWLRSHKTCPVCRADLDSMPKCEEENNNHNALQEPSCTDDNIRIDVKQGDASAGDQSQHQHQSMNMQQREEQRFARSHSTGHSIVMIRGGGGDEEKEDDKYTLRLPEHVIRGWHNNCTRSCRSCREMIGPEPCTNCAFLQPLSASSPLGHAQQS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi98g00041 290 FunFam E3 ubiquitin-protein ligase ATL6 68 155 - -
Sebi98g00041 290 Pfam Ring finger domain 106 149 IPR001841 -
Sebi98g00041 290 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Sebi98g00041 290 SUPERFAMILY RING/U-box 93 155 - -
Sebi98g00041 290 MobiDBLite consensus disorder prediction 187 206 - -
Sebi98g00041 290 MobiDBLite consensus disorder prediction 185 233 - -
Sebi98g00041 290 PANTHER RING FINGER DOMAIN-CONTAINING 14 158 - -
Sebi98g00041 290 SMART ring_2 107 148 IPR001841 -
Sebi98g00041 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi98g00041 Sebi-Chr98 1125123 1125995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi98g00041 22 247 Rapid Response to Elicitors AT2G35000 34.568 2.30e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi98g00041 - - gmx:100815505 353.984