Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi98g00021 ATGGGTAGTTTAGGGGTTGTGGAGTGGCTTAGACCCCTTGTGGAGACCAAGGGTTGGGATTACGTAGTTGTTTGGAAATATGGAGAAGATCCATCTAGGTTTATTGAGTGGATGGGTTGCTGTTGTAGAGGGAGTTGCAGTGGAAACATTGAGCAGGTGAAGCCCAAAGAGGAAATGGGTGAACAATACCACTTGGCTCCCATTTGCAGGGATACCCTCTTTCAGCATCCAGTTAGAACAAAGACTTGTGAGGCTCTTGCCCAGCTTCCTTTAGCAATGTCTCTGTATTCTGGTGTGCATGGAGAGGTTGCAATATCACAACAACCAAGATGGCTTACTCGCGAGGATTCAGTTGTAACTCAAGTTTTGATCCCTATTGTTGGTGGTCTCATCGAGCTCTTCACTGCAAAGCTGATTCCAAAAGATATAAATGTCATAGAGTTCATAACATCGCACTGTTGTGTCTCTATAAAGCAAGAAGCCATATCAGCACAGAGCTACACCAGTCTGAACTTCAATGAACATTACACTTTAACTCCTGGTGTCCATCTGCCTGCAGCAAACTGGTGCAGCTCCAATCCTACCATTGAAGGACCCTCTGGTGGATCTAATCCTTTAATTGATCACCCATCATCTGATTCAAAGTTTGTTTGCTTGATTCCTCATGAATATCTGAAGCAATCAGTTAAAGTATCTCCTACCCCAAAATCTAAAAAGCCAAAGCACAATGACTCTTCAAGGAAATGGCAGAGAGATTTGAGTTACCATTGTGGCAATGGGGAAGAAGATAAAGCAAAATTGATCTGGAAACCTCAAAAGGAAGGTTACCATGCTAAAAATCTTGTCACAGAGAGAAATAGGAGGAACAGAATAAAAAAAGGGCTTTTTACTCTACGATCTTTAGTCCCAAAGATAACCAAGATGGATAGAGCAGCAATTCTTGCAGATGCAATTGACTATATAAAGGAATTGCAGAGGCAAGTGAAAGAACTTAAAGAAGAGGTCAGTGCTTTGGAAGTACAAGACTGTGAGAAGAACACACTACAATTGAGGATGCCAACAGGCAAAGGACAAGGAGGAACCCCTCTCACAGAGCTTAATGAAGGTTCTTCTGATTGCACCAAAATGACGCAGATAGAGGCACAAGCAGAAGTGAATCACATTGGCAGGACAGATTTCTTGATTAAGTTATACTGTGAGCAGAAACAAGGTGGATTTTCAAGGTTGATGGAAGCTATACATTCTCTTGGATTGCATGTGACTAATGCCAATATGACCACATTTGATGGCAAAGTCCTGAACATTTTGACGGTTGAGGCAACTGAGCAGGATATTCACCCAACGAAACTGAAAGAGTATTTGATACAGCAAACAGGTTGA 1380 0.421 MGSLGVVEWLRPLVETKGWDYVVVWKYGEDPSRFIEWMGCCCRGSCSGNIEQVKPKEEMGEQYHLAPICRDTLFQHPVRTKTCEALAQLPLAMSLYSGVHGEVAISQQPRWLTREDSVVTQVLIPIVGGLIELFTAKLIPKDINVIEFITSHCCVSIKQEAISAQSYTSLNFNEHYTLTPGVHLPAANWCSSNPTIEGPSGGSNPLIDHPSSDSKFVCLIPHEYLKQSVKVSPTPKSKKPKHNDSSRKWQRDLSYHCGNGEEDKAKLIWKPQKEGYHAKNLVTERNRRNRIKKGLFTLRSLVPKITKMDRAAILADAIDYIKELQRQVKELKEEVSALEVQDCEKNTLQLRMPTGKGQGGTPLTELNEGSSDCTKMTQIEAQAEVNHIGRTDFLIKLYCEQKQGGFSRLMEAIHSLGLHVTNANMTTFDGKVLNILTVEATEQDIHPTKLKEYLIQQTG 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi98g00021 459 SMART finulus 281 330 IPR011598 GO:0046983
Sebi98g00021 459 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 151 IPR025610 -
Sebi98g00021 459 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 141 456 - -
Sebi98g00021 459 CDD ACT_UUR-ACR-like 394 456 - -
Sebi98g00021 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Sebi98g00021 459 MobiDBLite consensus disorder prediction 237 252 - -
Sebi98g00021 459 Gene3D - 270 342 IPR036638 GO:0046983
Sebi98g00021 459 MobiDBLite consensus disorder prediction 230 252 - -
Sebi98g00021 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 341 IPR036638 GO:0046983
Sebi98g00021 459 Coils Coil 314 341 - -
Sebi98g00021 459 Pfam Helix-loop-helix DNA-binding domain 282 325 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi98g00021 Sebi-Chr98 651578 654136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi98g00021 93 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 28.997 1.51e-37 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi98g00021 bHLH-MYC_N 1.4e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi98g00021 - - gmx:100807261 630.172