Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi98g00016 ATGTCTCTCTGTGCTGCACTCTCCTCCACAACTTCCCACCTCACCACCATCCTTCCATCTCTCCCTTCCACCTCTCCACTTTCTCGCAGATTTTCCTTCACTTTCCGGGAAAACAGAAACCCAATCCTCTCCCCTCACCGGCACTCGTTTTCAACAAGGCCTACCAGAGTCTTGGTAAAGTCTCAGACTACTGCACCTGCTTCTTCTGAGGCTGTCAAAGTGACACCTGTTCCTTCTGACATGAAAGCCTGGGTCTATGGGGAATATGGTGGTGTGGATGTTTTGAAGTTTGACTCCAATGTTGCTGTGCCTGATGTGAAGGAAGATCAGGTTCTTGTCAGAGTTTTTGCTGCAGCTCTTAACCCTGTTGATGCCAAGAGAAGGCAGGGAAAGTTCAAGGCCACTGATTCTCCTCTTCCGACTGTTCCAGGCTATGACGTTGCCGGTGTGGTAGTGAAGGTTGGTAGTCAAGTAAAGGACTTCAAAGAGGGTGATGAAGTATATGGGAATGTAAACGAGAAAGCACTAGAAGGGCCTAAGCAGTTTGGGTCTCTGGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACCAAAACCTAAGAATTTGGACTTTGCTCAAGCTGCTGGTCTTCCTCTAGCAATTGAGACTGCTTATGAGGGTTTGGAGAGGACTGGATTTTCATCTGGTAAATCTATTCTTGTTCTAAATGGTTCTGGTGGAGTTGGAAGCCTAGTGATTCAGCTAGCTAAGCAAGTTTTTGGAGCTTCAAGAGTTGCTGCCACTTCCAGCACTAGAAATTTGGAGCTGTTGAAAAGCCTGGGAGCTGATTTGGCTATTGACTACACAAAGGATAATTTTGAAGACTTACCAGAAAAATTTGATGTAGTTTATGATGCCATCGGGCAATGTGACAGGGCAGTGAAGGCTATCAAAGAAGGTGGCAGTGTGGTAGCACTGACAGGTGCTGTTACACCACCTGGCTTTAGATTTGTAGTAACTTCCAATGGAGCTGTTCTGAGGAAATTAAACCCTTATTTAGAGAGTGGAAAAGTGAAGCCAATTGTAGACCCCAAAGGTCCATTCCCCTTTTCCCAGCTTGCTGAAGCCTTCTCTTACCTTGAAACAAACCGAGCTACCGGAAAGGTTGTTATACATCCCATCTCATGA 1170 0.4607 MSLCAALSSTTSHLTTILPSLPSTSPLSRRFSFTFRENRNPILSPHRHSFSTRPTRVLVKSQTTAPASSEAVKVTPVPSDMKAWVYGEYGGVDVLKFDSNVAVPDVKEDQVLVRVFAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSQVKDFKEGDEVYGNVNEKALEGPKQFGSLAEYTAVEEKLLAPKPKNLDFAQAAGLPLAIETAYEGLERTGFSSGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRNLELLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGAVLRKLNPYLESGKVKPIVDPKGPFPFSQLAEAFSYLETNRATGKVVIHPIS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi98g00016 389 CDD MDR_like_2 81 385 - -
Sebi98g00016 389 Gene3D - 88 385 - -
Sebi98g00016 389 Gene3D - 222 336 - -
Sebi98g00016 389 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 230 251 IPR002364 GO:0008270|GO:0016491
Sebi98g00016 389 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 72 388 IPR044626 GO:0016628
Sebi98g00016 389 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 203 326 IPR036291 -
Sebi98g00016 389 SUPERFAMILY GroES-like 79 235 IPR011032 -
Sebi98g00016 389 ProSiteProfiles Pterin-binding domain profile. 271 389 IPR000489 GO:0042558
Sebi98g00016 389 Pfam Alcohol dehydrogenase GroES-like domain 109 172 IPR013154 -
Sebi98g00016 389 SMART PKS_ER_names_mod 90 385 IPR020843 GO:0016491
Sebi98g00016 389 Pfam Zinc-binding dehydrogenase 274 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi98g00016 Sebi-Chr98 509475 512336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi98g00016 105 311 Monolignol Biosynthesis Gene Families AT4G39330 25.751 3.60e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi98g00016 K18980 - gmx:100810816 616.69