Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi985g00008 ATGGTGATGGTTCCTGCAACATTTCATAAGATCAATAGTATCTGTGGGAGGAGGCAAAACTGGCGTTTGAAAGTTAAGCTGGTTAGGGTATGGAATATGTGTGTAGTTGCCACCCCTAATGATCCATACGCAATGCAGATGGTGTTTGTAGATGAAGAGGGACGGAAGATAGAGGTTGTAGTCCAAAAGCAGTATATGAAGAAATTTGCACAGTGCCTGGTTGAGGGGGAAGTGTACAGGATAACCAACTTCGGTGTCTCTTCTAATGGAGGCAAGTTTAGGGCTGCTGGGCACGACTACAAGCTGTCGTTTTCAGCATGTACTCAGGTTACTTTGTGTCATGGAGTTTTTATACCTGGGTTAGGGCTCTCTCTTGTGAAGACTTCTGCTATCAAGAAAACAAATGGACGTTCGGTCTACCTCGTGGATTTCATGGGAGTTGTAACTATTGTCTCTAAGGAACTTAATATTAACAGGGAGGGAAGGCAGACCCGTCTAATGTTGATAGACTTGGTTGATGAATTTGGGAAGATTCGGTGTGCTGTGTTTGGTGATCTTATTAATGTTTTTATGGAGTTCCTTGCTCTCCCACAACATGGGTTGCCTGTTATGATAATTCAATTCGCAAGGGTTAATCTTTATAAATGGGAGGTTGGCATACAGAATGTCATGAATGCATCAAAGATATTATGGAATCCAGATATTCCTCTGGCAGTGGACTTTAAAAATAGCCTAGTTGTCCATGAAATTAAAACTGATGTTTCTATCTCTACTATCACTGATCGGAGACGAGCACCATCTATGAGGGATGAGTTCCTTAAATTATATCCAAAGAAATCAATTGGTCAACTGTATGATATGGTTGAGGAAGGTTTCTTTATAATAATAGCCACCATAAGTGAGATTGTTGAAGACTTCAAGTGGTGGTACATGGCATGTTCCTGTATGAGAGGTGTGTCTTTTGTTGATGGGGTCCATTTCTGTGAAGATTGTAACAGACATGTTTTTTATATGACCCCTAGATACAAGGTGAAGCTGGTGGTGTGTGATGGGAATGATAATGCACATTTCATTCTTTGGGATTTAGACTGCTACTCACTTGTGAATAAAACCCGTCGACAGATGTTGGATGATCTTGAGGGTCAGCCTATTGGGTTATTCCCAGAAGAAATTATGAACTTGGTTGGCAAGGAGATGCTTTTTCGAATAGAAAGCAGCCAAGAAGATTTACTTACCTTTGAAAACACTTTTAAGATCAAGAAGGTGTGTTGTGATGTGGATATATTGGCTGAATATAAAGACCAAGTTACTGATGAAACTCCTCTAAAGTTGAATTTTGCTGCTGCCTTCACCAAGATACTCGACGCTGATGCAAATGGTGAAGGACTTCAACTTTCCACATGCTGCAAGTCTATTGCAACTGAGCTTGAGATCACTCCTCCATCATGTGTTGCATCTTCCACCAATGGGGAGGAAATTGGGAGCAGTGGTAAAAGGGATATCGAAGAACCAGATGAGACTCCACTAGAGAGGAAGAAGAGGGGCCAGGGTCAGAGTCGTGAAAGTGGAGAAAAACTGAATGGTGCTTCTGATAGTCTATATGTGAATATAACTTATTTTGTTATCTGTAAATAG 1635 0.4098 MVMVPATFHKINSICGRRQNWRLKVKLVRVWNMCVVATPNDPYAMQMVFVDEEGRKIEVVVQKQYMKKFAQCLVEGEVYRITNFGVSSNGGKFRAAGHDYKLSFSACTQVTLCHGVFIPGLGLSLVKTSAIKKTNGRSVYLVDFMGVVTIVSKELNINREGRQTRLMLIDLVDEFGKIRCAVFGDLINVFMEFLALPQHGLPVMIIQFARVNLYKWEVGIQNVMNASKILWNPDIPLAVDFKNSLVVHEIKTDVSISTITDRRRAPSMRDEFLKLYPKKSIGQLYDMVEEGFFIIIATISEIVEDFKWWYMACSCMRGVSFVDGVHFCEDCNRHVFYMTPRYKVKLVVCDGNDNAHFILWDLDCYSLVNKTRRQMLDDLEGQPIGLFPEEIMNLVGKEMLFRIESSQEDLLTFENTFKIKKVCCDVDILAEYKDQVTDETPLKLNFAAAFTKILDADANGEGLQLSTCCKSIATELEITPPSCVASSTNGEEIGSSGKRDIEEPDETPLERKKRGQGQSRESGEKLNGASDSLYVNITYFVICK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi985g00008 544 MobiDBLite consensus disorder prediction 483 526 - -
Sebi985g00008 544 CDD RPA1_DBD_C 292 408 IPR047192 -
Sebi985g00008 544 Gene3D - 118 252 IPR012340 -
Sebi985g00008 544 Gene3D - 273 435 IPR012340 -
Sebi985g00008 544 Pfam Replication factor-A C terminal domain 292 426 IPR013955 -
Sebi985g00008 544 SUPERFAMILY Nucleic acid-binding proteins 7 114 IPR012340 -
Sebi985g00008 544 Pfam Domain of unknown function DUF223 47 117 IPR003871 -
Sebi985g00008 544 PANTHER OS03G0429900 PROTEIN 9 412 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi985g00008 544 SUPERFAMILY Nucleic acid-binding proteins 124 245 IPR012340 -
Sebi985g00008 544 Gene3D - 6 113 IPR012340 -
Sebi985g00008 544 MobiDBLite consensus disorder prediction 495 520 - -
Sebi985g00008 544 SUPERFAMILY Nucleic acid-binding proteins 277 425 IPR012340 -
Sebi985g00008 544 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi985g00008 Sebi-Chr985 133212 135697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi985g00008 9 409 Core DNA Replication Machinery Family AT5G08020 23.460 4.01e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi985g00008 - - lja:Lj6g3v0884310.1 338.961