Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi982g00004 ATGGGAGCACCTCTGGGAACCATAGAAGACCACAATGCGAGTGTATCTCCAGTGGATGAATTCTTGCACATGTATCCAAGGAAGACAATCAGTGAACTTAATGACACTAAAGAGAATGGATTTTTCATTGTGCTGGCAACTATAGTCACAGTTCTAACTGATAGTAGCTGGTGGTACTCTGTATGCAAGTGTAATAGAGCGGTGACAGTTGACGGAGACAAATACTATTGTGCCCACTGTGCATGTAATGTGACTGATGTTACCCCAAGGTATAAGTTGAAGGTTGAGGTGTTTGATGGGGATGAGACAACTGCATTTGTCATGTTCGATAGTGATGTTGAGTTGGTCACTAGTGTTTCATGTTCTTCCCTCCTTGCTCTCTACAAGGATGGTGGAATAGACCAGCTCCCGCCAGAGCTGGAAGATTTGGGGGGAAAAGAGTTCCTTTTCAAGGTGGAAAAGACTGATGACTACGCTTTCAAATATGACGACACCTTCAAGGTTAAGAAGGTTTGCATTGTTGAGGAAATAATTGAGCATTTCAAGGAGTTAAAGAGGATATCAACTCCTAAAGCTGCTGGATGCCTTATTGGGACTCTTGCTGATGCAACAGGTGAGGGTAGCAGTTGTGGCACCAATCTGGATGGCGAGAAGGGCAAAAAAGTGGCCTAA 672 0.4405 MGAPLGTIEDHNASVSPVDEFLHMYPRKTISELNDTKENGFFIVLATIVTVLTDSSWWYSVCKCNRAVTVDGDKYYCAHCACNVTDVTPRYKLKVEVFDGDETTAFVMFDSDVELVTSVSCSSLLALYKDGGIDQLPPELEDLGGKEFLFKVEKTDDYAFKYDDTFKVKKVCIVEEIIEHFKELKRISTPKAAGCLIGTLADATGEGSSCGTNLDGEKGKKVA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi982g00004 223 SUPERFAMILY Nucleic acid-binding proteins 25 170 IPR012340 -
Sebi982g00004 223 Pfam Replication factor-A C terminal domain 41 176 IPR013955 -
Sebi982g00004 223 CDD RPA1_DBD_C 28 171 IPR047192 -
Sebi982g00004 223 Gene3D - 21 187 IPR012340 -
Sebi982g00004 223 PANTHER OS03G0429900 PROTEIN 28 165 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi982g00004 Sebi-Chr982 87977 89163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi982g00004 41 152 Core DNA Replication Machinery Family AT5G08020 26.957 1.54e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi982g00004 - - lja:Lj1g3v3385890.1 181.8