Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi97g00037 ATGGGTGTTGCAGCTGCAGGCAACTTATATTATTCTGGCATGAATCCTTCTTCTGGTACTGCTGTATTCCCTCCGCCTTCAAGCACATTTGGACTCACTGGAGTCTCTTCAGATAATTTTGGAAGAAGCACTGGTTTCATGGATGATGTCAGAGGTCCATACAAAAGTAAAATTTCCGAAGGGATTAGAGGAAATCATCCGAATTTTAATGCTTCAGCTAGTTCTTCAGTTACTCCCCCTAATGCAAGACATGCTGATGGGGTTGCTATGATGGATGCTACATCATTTTCATACCATGTCCCTTCACTTATGGAAGTAGGAGTAGGACCACATGGTAGTGCGTGGAGCAGGCCAGGTGAGCCTATTATGATTCATGACCATAACCATTTGATTCATGGAAACTATTTGGGGCAGCACTTTCCACCAGCTGCTCCTCCCTGGTTGGACCAGCAGTTGAATAATAATAACAATGATGGCCATCCTACAGCCTGGAATCAATCTCTTCCAATGCCTTATATACAAGTGCCCAATGTAAATGGAAGTTCATTAGAGAGTCCAAGTATGGGTTTGCAAAGATATCATGATACATCTGCCAACAGAAATGGCCTCAGGTTTCCTCATCCTCCTCCTGTTAACCAACAGCACCATACTTATCATCATCCAGCACTTCCTATGCAAGGAGTAAGAGGTCACAATATCAACTTTTACCCTCCAATAACTGCAACTTCATTAGAGTTCCAACCAATCCTTCACGTGGTGCTGCAATCCCCACACAGACTGGTTTTGAGATGGGTCCTAGGCATGTTGGCCCTGCACCACCAGCAGGCTTCCGGGTTTACCGACCTAATAGAGGAGTCATGCATGGGACAGCTCTTGGACATCGAAGTCTCCCCCCTGTGGGCTTCGTTCAAGTTGATAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGCAAGTACACAAAGATTGATATTGTATTATACTATCAATGATCTTCTTGCATTGGGTGAGCGGATTGGCAATGTAAGCACTGGTTTATCAGAGGAAACAATCACAACTCAATTGAAGACAAAATCTTATTTAACACCTGCTGCTGCTATTAATGTGGAGGAGGCAGCTTCTGATGATCAGGAAACTGATTCTTGTATAATATGTCAGGATGAATTTAAGGACCAAGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATATCATGCAGATTGCTTAAAGAAATGGTTGCTTGTAAAAAATGTCTGCCCCATATGCAAATCAGAAGCTTTGACTACTGGAGGGAGGGATGCATAG 1308 0.4335 MGVAAAGNLYYSGMNPSSGTAVFPPPSSTFGLTGVSSDNFGRSTGFMDDVRGPYKSKISEGIRGNHPNFNASASSSVTPPNARHADGVAMMDATSFSYHVPSLMEVGVGPHGSAWSRPGEPIMIHDHNHLIHGNYLGQHFPPAAPPWLDQQLNNNNNDGHPTAWNQSLPMPYIQVPNVNGSSLESPSMGLQRYHDTSANRNGLRFPHPPPVNQQHHTYHHPALPMQGVRGHNINFYPPITATSLEFQPILHVVLQSPHRLVLRWVLGMLALHHQQASGFTDLIEESCMGQLLDIEVSPLWASFKLIDMRLDIEDMSYEASTQRLILYYTINDLLALGERIGNVSTGLSEETITTQLKTKSYLTPAAAINVEEAASDDQETDSCIICQDEFKDQEKIGVLRCEHEYHADCLKKWLLVKNVCPICKSEALTTGGRDA 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi97g00037 435 ProSiteProfiles Zinc finger RING-type profile. 383 424 IPR001841 -
Sebi97g00037 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 51 428 IPR045191 GO:0061630
Sebi97g00037 435 SUPERFAMILY RING/U-box 376 428 - -
Sebi97g00037 435 FunFam E3 ubiquitin ligase BIG BROTHER 343 428 - -
Sebi97g00037 435 Pfam Ring finger domain 381 424 IPR001841 -
Sebi97g00037 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 428 IPR013083 -
Sebi97g00037 435 CDD RING-H2_RNF24-like 381 427 - -
Sebi97g00037 435 SMART ring_2 383 423 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi97g00037 Sebi-Chr97 1179089 1181162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi97g00037 307 430 C3H Transcription Factor Family AT2G15530 45.968 4.19e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi97g00037 K19041 - gmx:100800642 483.026