Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi979g00006 ATGAAGAGGTCTCCACCATCTTCTTGTTCATCATCATCCTCTTCTGTTGGGTTTGAAACTCCCATTATTCAATCAGAGAAAAGAAAGGCTAAACATCCGAGAAGGAATCCCAAGTCCTCACAGAAATGTAAGCAGAACCAAACCACTGGAAGCAGAAGAAGCTCCATTTACAGAGGAGTTACAAGGCATAGGTGGACAGGAAGGTTTGAAGCTCACCTATGGGATAAGAGTTCCTGGAACAACATTCAGAGCAAGAAGGGACGACAAGGGGCATATGATACTGAAGAAGCAGCAGCTCGTACCTATGATCTTGCAGCACTCAAGTACTGGGGGAAGGATGCAACCTTGAATTTCCCTATAGAAACATATTCAAAGGACCTTGAGGAAATGGACAAGGTGTCAAAAGAAGAATACTTGGCTTCTTTGCGGCGTCAAAGTAGTGGTTTTTCTAGGGGCATTTCAAAGTACCGTGGTGTGGCCAGGCATCACCATAATGGCCGTTGGGAAGCTCGGATAGGAAGAGTGTGTGGAAACAAGTACCTTTACTTGGGGACATATAAAACTCAGGAGGAGGCAGCTGTGGCATATGACATGGCAGCAATAGAGTACAGAGGACTCAATGCAGTGACCAATTTTGACATAAGCAATTATATTGACAAAATAAAGAAAAATGGCCAATCCCAACAAACAGAAGCACAGGTAGAAATAGCTCCTAACTCCTCTGACTCTGAAGAAGCGGAAGTTGAAGTAGAACAGACTGCTACACCCCCACCTGAGAATCTGCACATACAACCACAGGAGCACCAATTTCAACACACTCATGTTCCTCCAAGCGAGGAATCCTCACTAGTTACTGTTATGGACCATGTTCTTGAGCAGGACTTACCCTGGAGCTTCATGTACACAGGGCTATCACAGTTTGAAGACCCTGAATTGGCTTTGAGCAAACCTGAGGATTTAATGAGCATGTTTGATAGTGCTGGCTTTGATGAAGACATTAATTTTTTGCTCAGCACTGAACCTGGTGAGAGTGATATTAATATCAGTGCAGTTTTGGATAGTATTGACTCTGGAGACACAAATGGGGCTGCTGGAACCATGGTGGTTGATAACCAGCAGAAGCAGCTATTATCCTTATCTTCTTCACCATCATCAACAACAACTACAATTTCTTCTAACTATTCTCTATGA 1191 0.4358 MKRSPPSSCSSSSSSVGFETPIIQSEKRKAKHPRRNPKSSQKCKQNQTTGSRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGRQGAYDTEEAAARTYDLAALKYWGKDATLNFPIETYSKDLEEMDKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGLNAVTNFDISNYIDKIKKNGQSQQTEAQVEIAPNSSDSEEAEVEVEQTATPPPENLHIQPQEHQFQHTHVPPSEESSLVTVMDHVLEQDLPWSFMYTGLSQFEDPELALSKPEDLMSMFDSAGFDEDINFLLSTEPGESDINISAVLDSIDSGDTNGAAGTMVVDNQQKQLLSLSSSPSSTTTTISSNYSL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi979g00006 396 FunFam AP2-like ethylene-responsive transcription factor 154 215 - -
Sebi979g00006 396 SMART rav1_2 155 219 IPR001471 GO:0003700|GO:0006355
Sebi979g00006 396 SMART rav1_2 56 125 IPR001471 GO:0003700|GO:0006355
Sebi979g00006 396 SUPERFAMILY DNA-binding domain 154 215 IPR016177 GO:0003677
Sebi979g00006 396 SUPERFAMILY DNA-binding domain 55 121 IPR016177 GO:0003677
Sebi979g00006 396 MobiDBLite consensus disorder prediction 236 261 - -
Sebi979g00006 396 Gene3D AP2/ERF domain 154 215 IPR036955 GO:0003700|GO:0006355
Sebi979g00006 396 Gene3D AP2/ERF domain 56 121 IPR036955 GO:0003700|GO:0006355
Sebi979g00006 396 PRINTS Ethylene responsive element binding protein signature 195 215 IPR001471 GO:0003700|GO:0006355
Sebi979g00006 396 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Sebi979g00006 396 MobiDBLite consensus disorder prediction 1 56 - -
Sebi979g00006 396 MobiDBLite consensus disorder prediction 1 21 - -
Sebi979g00006 396 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 274 - -
Sebi979g00006 396 CDD AP2 154 215 IPR001471 GO:0003700|GO:0006355
Sebi979g00006 396 MobiDBLite consensus disorder prediction 377 396 - -
Sebi979g00006 396 ProSiteProfiles AP2/ERF domain profile. 56 119 IPR001471 GO:0003700|GO:0006355
Sebi979g00006 396 Pfam AP2 domain 56 111 IPR001471 GO:0003700|GO:0006355
Sebi979g00006 396 Pfam AP2 domain 154 205 IPR001471 GO:0003700|GO:0006355
Sebi979g00006 396 ProSiteProfiles AP2/ERF domain profile. 155 213 IPR001471 GO:0003700|GO:0006355
Sebi979g00006 396 MobiDBLite consensus disorder prediction 40 56 - -
Sebi979g00006 396 CDD AP2 55 120 IPR001471 GO:0003700|GO:0006355
Sebi979g00006 396 FunFam AP2-like ethylene-responsive transcription factor 55 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi979g00006 Sebi-Chr979 59629 63429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi979g00006 23 276 AP2-EREBP Transcription Factor Family AT5G57390 50.370 1.93e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Sebi979g00006 AP2 7.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi979g00006 - - gmx:100527432 576.63