Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi979g00004 ATGGATGGTGAAACAGTAGATGAAGGGGAAAACAGTGATAGACCTGCTTCTAAAAATGTTGAAACTGAAAATGGCCAAGTGCAAATTATGACTGTAAACTTGGCTGAAAGAGAAGTAAATAATCAGGATGGTGATGTGTATAGGAAACCACAGGTGGGCATCCAATTTGAATCTGAAGATGCTGCAAGATCATTTTATGATACATATGCAAGACATATCGGATTTAGCATCCATGTTGGTCAATTCAGTCGTTCTAAGCCTGATGGTCCAATCATAACTTGGGACTTTTCTTGTTCCAGGGAGGTATTGAAAAGGAAGAATGTAATAAGTTGCAATGCAATGCTTAGGATAGAGAGAAAAGATGCAAACTGGATAGTGACAAAATTTGTTGAGGACCATAATCATTCCCTGGCTTCCTCTAAAAAGGTGCAGTACCTTCGACCCCATAGGCATTTTGCAGGTGCTACAAGAAATGTGACAGAGGCATTTGATGCCAGTAATGATTCCTATGTTTCTATGAATGGAAATCATTTAGAACCAATTAGTACAATTAGGAGTTCCTCTCCAGCTGACATAAGTCATCCAACGAGAAACATTGGGTCCTTTGCCTATTGGCACATTTTGAGAGAAGGTCAGGAAAGATTGGCTCACATTTACCTTGCTCATCCTTCATTGTATGGGGAGTTGTATAGCTGCATAAATTTCTCTGAGACTGTTGAGGATTTTGAATCAACATGGAAGTCTCTTCTAGATAAATATGATCTCCAGAAAAATGATTGGCTTCTAGCAGTGTATAATGCTCGCAAACAATGGGCACCTGTTTACTTTCGTGATACTTTCTTTGCTGCATTTACCTCAAACCATGGGGTTAGCTCCTTTTTTGATGGCTATGTAAATCAACAGACAACCATACCTTTATTCTTTAAGCAGTATGAACGATCTATTGAACATTCATTGGAAAAGGAAATAGAAGCAGATTACGAGACCATTTGTACCACACCTATATTGAAGACTCCATCACCAATGGAACAACAAGCTGCAAATCTGTACACTAAAAAGATTTTTGCGAAGTTTCAGGAGGAGCTGGTGGAAACTTTTGTGTATACTGCGAATAATATTGAGGATGATGGGGTGGTCAGTAAATACAGGGTTGCAAAATATGAACATGATTACAAGGCATACATGGTCACATTAAATATCTCTGAATTGAAGGCGAATTGCAGCTGTCAGATGTTTGAATACTCAGGCATTCTTTGTCGACATATATTGACTGTCTTCACTGTTACAAATGTTCTTACCCTTCCATCACACTATATTTTGAAGCGATGGACAAGGAATGCGAAATCCAGTATCGGAACTGATGAAAAAATACCAGATTCACTTGACATTGAAAATCTCACTTTACGTTTTAATAGTTTATGTCGAGAAGCCATTAAGCTTGCAGAAGAAGGGGCAATATCTATAGAGACTTATAATGCGGCAATGAATGTCTTTAGAGAGGGTGCTAAAAGGGTTGGTGTTGTGAAGAAAAATGTAGCAAAAGTCAGACCTCCAAGCACTCAGGGTAATGGAAGCAGTCAGGAAGACAATAGCAAGAAGAGCCCTTCATCAATTTCTGAAGCCATGCCGTCATTGTGGCCTTGGCAAGATTCAGTGACACATCACTTTAATCTTAATGACATTGGGCTTCCTGTTACTGATCTGAATCATCCTAGTATGGCTCCTGTTTCTATTCATCGGGATGGTGGTCCACCAGATAACACTGCTGTCCTTACTTGTTTCAAGTCTATGACTTGGGTAATAGAAAATAATAATTCAAGTCCATCCAGTAAAGTTGCAGTGATCAACATGAAGCTGCAAGATTATGGCAAGATCCCTTCAGGAGAGACAGAAGTGCAATTCAGGGTGACAAGGATCACTTTGGAGCCTATGTTGAGGTCTATGGCTAACATCAGCCAGCAGCTCACTACACCAGTCAATAGAGTTGCTGTCATCAGTCTGAAAGTATATAAACTTGGATTCATGATCCTCTACTCTTTCTAG 2043 0.395 MDGETVDEGENSDRPASKNVETENGQVQIMTVNLAEREVNNQDGDVYRKPQVGIQFESEDAARSFYDTYARHIGFSIHVGQFSRSKPDGPIITWDFSCSREVLKRKNVISCNAMLRIERKDANWIVTKFVEDHNHSLASSKKVQYLRPHRHFAGATRNVTEAFDASNDSYVSMNGNHLEPISTIRSSSPADISHPTRNIGSFAYWHILREGQERLAHIYLAHPSLYGELYSCINFSETVEDFESTWKSLLDKYDLQKNDWLLAVYNARKQWAPVYFRDTFFAAFTSNHGVSSFFDGYVNQQTTIPLFFKQYERSIEHSLEKEIEADYETICTTPILKTPSPMEQQAANLYTKKIFAKFQEELVETFVYTANNIEDDGVVSKYRVAKYEHDYKAYMVTLNISELKANCSCQMFEYSGILCRHILTVFTVTNVLTLPSHYILKRWTRNAKSSIGTDEKIPDSLDIENLTLRFNSLCREAIKLAEEGAISIETYNAAMNVFREGAKRVGVVKKNVAKVRPPSTQGNGSSQEDNSKKSPSSISEAMPSLWPWQDSVTHHFNLNDIGLPVTDLNHPSMAPVSIHRDGGPPDNTAVLTCFKSMTWVIENNNSSPSSKVAVINMKLQDYGKIPSGETEVQFRVTRITLEPMLRSMANISQQLTTPVNRVAVISLKVYKLGFMILYSF 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi979g00004 680 MobiDBLite consensus disorder prediction 510 540 - -
Sebi979g00004 680 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 505 IPR031052 GO:0006355
Sebi979g00004 680 Pfam SWIM zinc finger 396 428 IPR007527 GO:0008270
Sebi979g00004 680 Pfam FAR1 DNA-binding domain 64 138 IPR004330 -
Sebi979g00004 680 SMART 26again6 405 432 IPR006564 GO:0008270
Sebi979g00004 680 MobiDBLite consensus disorder prediction 1 25 - -
Sebi979g00004 680 MobiDBLite consensus disorder prediction 516 540 - -
Sebi979g00004 680 ProSiteProfiles Zinc finger SWIM-type profile. 394 430 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi979g00004 Sebi-Chr979 49586 52505 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi979g00004 FAR1 4.9e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi979g00004 - - ccaj:109794121 844.343