Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi979g00002 ATGGGATATGAAACCAGAAGGCTCTCAGATGAGTATGAGGTTTCAGATGTTCTAGGAAGAGGTGGATTTTCTGTTGTCAGAAAAGGTACCAAAAAATCAAGCAGTGAGAAAACCTCAGTAGCCATCAAAACACTGAGAAGGTTAGGTGCTTCTAATAACAACCCTTCTGGTTTACCAAAAACAAAAGGTGGAGAGAAGAGCATAGCAACTATGATGGGGTTCCCCACATGGAGACAGGTTTCAGTCTCAGATGCCTTGTTGACCAATGAGATTCTTGTCATGAGGAGGATAGTCGAAAATGTTTCACCTCACCCCAATGTGATTGATCTCTATGATGTGTATGAGGACTCAAATGGGGTTCATCTTGTGCTTGAGCTTTGTTCTGGTGGGGAATTGTTTGATAGGATTGTGGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGCTGTGGTTCGCCAGATAGCAGCAGGATTAGAGGCTATTCATAGAGCTAACATTGTTCATAGGGACTTGAAGCCTGAGAATTGCCTTTTTTTGGATACCAGGAAGGACTCTCCTCTCAAGATCATGGACTTTGGGTTGAGTTCTGTTGAAGAATTTACTGACCCTGTTGTTGGTTTGTTTGGATCAATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGAAAGATAACTACTAAGAGTGACATGTGGTCTCTAGGAGTAATTTTATATATCTTACTCTCTGGGTATCCACCTTTCATTGCTCCGTCTAATCGCCAAAAACAACAAATGATAGTGAACGGGAATTTCAGTTTCTATGAGAAGACTTGGAAGGGCATTTCCCAATCAGCAAAGCAATTGATTTCAAGTCTTCTGACTGTTGATCCTAGCAAGAGACCAAGTGCTCAACAGCTTCTGAGTCATCCATGGGTTATAGGTGAGAAAGCCAAAGATGATCAAATGGACCCTGAAATTGTCTCAAGGCTGCAGAGCTTTAATGCAAGACGCAAACTGCGTGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACAGTCTTCCTCAGAACCAAAAAACTGAGATCCTTGGTAGGAACCCATGATCTCAAAGAAGAGGAAATTGAAAACCTCAGGATACATTTCAAGAAGATATGTGCAAATGGAGACAATGCCACTCTCTCTGAGTTTGAGGAGGTGCTGAAAGCAATGAATATGCCATCATTGATCCCTCTAGCACCTCGTATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGCGAGAGATACTATGTGGGTTTTCTAGTCTCAAGAACTCCAAAGGAGATGATGCTCTCCGTTTGTGCTTCCAGATGTATGACACAGATCGATCCGGGTGCATCACCAAGGAAGAAGTAGCATCTATGCTCAGAGCTTTGCCAGATGATTGTCTTCCAGCTGATATCACTGAACCTGGCAAATTGGATGAGATATTTGATTTAATGGATGCAAATAGTGATGGAAAAGTTACCTTTGAGGAATTCAAAGCTGCTATGCAGAGAGATAGCTCTCTCCAAGATGTAGTCCTCTCTTCTCTTCGCCCATAA 1569 0.4251 MGYETRRLSDEYEVSDVLGRGGFSVVRKGTKKSSSEKTSVAIKTLRRLGASNNNPSGLPKTKGGEKSIATMMGFPTWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAAVVRQIAAGLEAIHRANIVHRDLKPENCLFLDTRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAPSNRQKQQMIVNGNFSFYEKTWKGISQSAKQLISSLLTVDPSKRPSAQQLLSHPWVIGEKAKDDQMDPEIVSRLQSFNARRKLRAAAIASVWSSTVFLRTKKLRSLVGTHDLKEEEIENLRIHFKKICANGDNATLSEFEEVLKAMNMPSLIPLAPRIFDLFDNNRDGTVDMREILCGFSSLKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPDDCLPADITEPGKLDEIFDLMDANSDGKVTFEEFKAAMQRDSSLQDVVLSSLRP 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi979g00002 522 SUPERFAMILY Protein kinase-like (PK-like) 5 327 IPR011009 -
Sebi979g00002 522 CDD STKc_CAMK 12 304 - -
Sebi979g00002 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Sebi979g00002 522 SMART efh_1 439 467 IPR002048 GO:0005509
Sebi979g00002 522 SMART efh_1 403 431 IPR002048 GO:0005509
Sebi979g00002 522 SMART efh_1 481 509 IPR002048 GO:0005509
Sebi979g00002 522 ProSiteProfiles EF-hand calcium-binding domain profile. 435 470 IPR002048 GO:0005509
Sebi979g00002 522 Pfam EF-hand domain pair 438 507 IPR002048 GO:0005509
Sebi979g00002 522 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Sebi979g00002 522 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 348 517 - -
Sebi979g00002 522 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 482 - -
Sebi979g00002 522 ProSiteProfiles Protein kinase domain profile. 12 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi979g00002 522 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Sebi979g00002 522 CDD EFh 406 465 IPR002048 GO:0005509
Sebi979g00002 522 ProSitePatterns Protein kinases ATP-binding region signature. 18 43 IPR017441 GO:0005524
Sebi979g00002 522 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Sebi979g00002 522 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 132 322 - -
Sebi979g00002 522 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Sebi979g00002 522 Gene3D Transferase(Phosphotransferase) domain 1 133 348 - -
Sebi979g00002 522 CDD EFh 440 507 IPR002048 GO:0005509
Sebi979g00002 522 Gene3D Phosphorylase Kinase; domain 1 75 132 - -
Sebi979g00002 522 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Sebi979g00002 522 PRINTS Recoverin family signature 431 450 - -
Sebi979g00002 522 PRINTS Recoverin family signature 497 517 - -
Sebi979g00002 522 PRINTS Recoverin family signature 361 380 - -
Sebi979g00002 522 PRINTS Recoverin family signature 407 428 - -
Sebi979g00002 522 Gene3D - 349 516 - -
Sebi979g00002 522 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 128 - -
Sebi979g00002 522 SUPERFAMILY EF-hand 348 511 IPR011992 -
Sebi979g00002 522 SMART serkin_6 12 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi979g00002 522 Gene3D Phosphorylase Kinase; domain 1 7 52 - -
Sebi979g00002 522 Pfam EF hand 408 423 IPR002048 GO:0005509
Sebi979g00002 522 Pfam Protein kinase domain 12 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi979g00002 Sebi-Chr979 28292 32415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi979g00002 3 508 EF-hand Containing Proteins AT5G23580 33.333 7.35e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Sebi979g00002 Pkinase 1.6e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi979g00002 K13412 - gmx:732616 928.702