Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi976g00003 ATGATGATCCACATTAGACTTACTTTGCTCCTATGTTTCCTACTGAGTCATTTTCATGGCATCCTATGCAACAATAACACAGATAGTGATAGAGATGCCCTTCTTTCATTCAGATCCCAACTCACTGACCCAAACAATGCTCTGTCCGGTTGGTTACTGCATTCCAATCACTGCAACTGGTATGGTGTCACCTGCTCCAAACTTGGAAACAGGGTCCAATCTCTCAACTTATCAGGACTTAGCCTCTCTGGTAAACTACCCTCTCACCTCTCCAATCTCACTTACCTTCATTCACTTGACCTTTCCAACAATACATTTCATGGCCAAATTCCCCCACAGTTTGGCCATCTCTCACTTCTTAATCTCATTAAATTAGCTTTCAACAATCTCAATGGTACACTTCCAGAACAGTTAGGCCATTTGCAACACCTACAAAGTCTAGACTTTTCTGTCAACAATCTCACAGGTAAAATCCCTCCAACATTTGGCAATCTCTTCTCTCTTAAGTATCTTGCATTGGCAAGGAACAAATTTGGGGGTGAGATTCCAAGTGAATTAGGTAATCTACGGAATCTTTCCCAACTTCAACTCTCAGAGAACAATTTCACTGGCGAGTTTCCCACTTCTATCTTCAACGTCTCTTCTTTAGTCTTCTTATCAGTGACACAAAACAATCTATCAGGCAAATTGCCACAAAATCTGGGCCTTGCCCTTCCAAATCTACAGACTATATCTCTGGCAACCAATAGGTTTGAAGGGGTCATTCCTAGTTCCATTTCCAATGCCTCAAACCTTCAAAAAATTGATCTTGCTAACAATAATTTCCATGGCTCCATACCTCTATTCAACAACTTGAAAAATCTTACTCACCTTATTCTTGGTAATAATTATCTCTCTTCCACCACCTCATTGAATTATAAGTTCTTTGATTCCCTTAGAAACTCCACTCAGTTGCAAATTCTCATGATCAATGATAACCATTTGACTGGGGAACTTCCAAGTTCTGTTGCCAATCTGTCTACCAATCTCCAACAGTTTTGTGTTGCTGATAATTGGTTAAATGGAAGCATTCCCCCAGGGATAGAGAAAATTAAAAATCTCATATCTTTGTCTTTAGAAAACAATGGTTTCACTGGAGAGTTGCCATCAGAATTAGGAGCACTAAATAACCTGCAGCAGCTTGTGATACACAGTAATAGATTGTCTGGGGAGATTCCAGACATTTTTGGCAATTTTACAAATCTGTATATCCTTGCAATGGGAAATAACCAGTTCTCTGGTAGAATCCATAAAAGTATTGGACAATGCGAGAGATTGATTTTTCTTGACCTGAGAAAGAATAGGCTTGGTGGGACCATACCACAGGAGATTTTTCAGCTTTCTAGCTTAACAACCTTGTACTTAACAGGAAACTCTCTGCATGGTTCTCTTCCTCCTGGGATCAACAACGTGAAACAGCTTGAAACCATGTTTATTTCAGACAACCAGTTGTCAGGGTACATTCCTAAGGAAATACAAGGTTGTTCTAGCTTGAAGACACTTGTGATGGCAAGAAACAAATTCAGTGGCTCAATTCCAAAGAGTCTAGGGGATTTAGCATCCCTTGAGACTTTGGACCTATCATCAAACAATCTCACTGGCCCATTTCCTCAAAGTTTAGAAAAGCTTCAGTATATGGTGAGATTAAATTTGTCTTTCAATCATTTGGAAGGGGAGGTTCCAATGAAAGGTGTTTTTATGAACCTTAGCCGGGTTGATCTCAGAGGTAACACCAAACTCTGTGGCCTTACCAATGAAATTGTGCAAAAGTTGGGAGTCTCCTTCTGTGATGTTGGTAAGAAAAAGAGAAACATTTTACTTCCTATCATATTAGCAGTTACAGGTGCTACTGCTTTGTTCATTTCAATGCTCTATCTAATGTGGGTGTTGATGTCCCGAAAGAGGAAATGCAACAAGCAGGGGAAAACTAATTTGTCATGTGCTCCTTTTAAGGGGTTGCCTCAAAATATATCATATGGAGATATTCGGCTTGCAACAAACAATTTTGCAGCTGAAAACTTGATTGGAAAAGGAGGGTTTGGCTCTGTTTATAAGGGTCTGTTCAGCTTCAGCATCAACACTGGTGAAACCACCACCCTTGCTGTTAAGGTCCTGGACTTAGAGCAAAGCAAAGCTTCTCAAAGTTTCAATGCTGAATGTGAAGCTTTAAGAAATGTCAGGCACCGGAACCTAGTGAAGGTCATCACTTCTTGCTGCAGTGTTGATTATAAAGGAGATGACTTTAAGGCCCTTGTGATGCAATTCATGGCCAATGGTAATTTGGACATGAGTTTATACCCCAATGATGAAGAGTCAGGATCCTCTCTAACCTTGCTGCAAAGATTAACCATTGCTATTGATGTTGCTTCTGCCATGGACTACTTGCATCATGACTGTGACCCACCAATAGTCCATTGTGATCTGAAACCAGTCAATGTGCTACTAGATGAAGATATGGTTGCACATGTTGCAGATTTTGGATTGGCCAGGTTTCTGTCTCAAAATCAATCAGAGCAACAAAGTAGCACTATGGGACTGAAAGGATCAATAGGCTATATTCCCCCAGAATATGGTCTAGGCGTTAAGGCTTCAACTCAAGGTGATGTCTACAGCTTTGGGATCCTACTCCTGGAGATGTTCATAGCCAAGAAACCAACTGATGAAATGTTTAAAGAAGGATTAAGCCTGAACAAATTCATCTCAGCTATGGATGAGAATCAAGTATTGAATATTGCAGATCAAAGGCTTATTAAGGATTATGAATATTCATCTCAAAGCTCCATCACTGATTATCATAATGAGTTGGCTTGTGTTGTACAGCTCATCAACCCAAAGATCGATGGACTATGA 2889 0.4012 MMIHIRLTLLLCFLLSHFHGILCNNNTDSDRDALLSFRSQLTDPNNALSGWLLHSNHCNWYGVTCSKLGNRVQSLNLSGLSLSGKLPSHLSNLTYLHSLDLSNNTFHGQIPPQFGHLSLLNLIKLAFNNLNGTLPEQLGHLQHLQSLDFSVNNLTGKIPPTFGNLFSLKYLALARNKFGGEIPSELGNLRNLSQLQLSENNFTGEFPTSIFNVSSLVFLSVTQNNLSGKLPQNLGLALPNLQTISLATNRFEGVIPSSISNASNLQKIDLANNNFHGSIPLFNNLKNLTHLILGNNYLSSTTSLNYKFFDSLRNSTQLQILMINDNHLTGELPSSVANLSTNLQQFCVADNWLNGSIPPGIEKIKNLISLSLENNGFTGELPSELGALNNLQQLVIHSNRLSGEIPDIFGNFTNLYILAMGNNQFSGRIHKSIGQCERLIFLDLRKNRLGGTIPQEIFQLSSLTTLYLTGNSLHGSLPPGINNVKQLETMFISDNQLSGYIPKEIQGCSSLKTLVMARNKFSGSIPKSLGDLASLETLDLSSNNLTGPFPQSLEKLQYMVRLNLSFNHLEGEVPMKGVFMNLSRVDLRGNTKLCGLTNEIVQKLGVSFCDVGKKKRNILLPIILAVTGATALFISMLYLMWVLMSRKRKCNKQGKTNLSCAPFKGLPQNISYGDIRLATNNFAAENLIGKGGFGSVYKGLFSFSINTGETTTLAVKVLDLEQSKASQSFNAECEALRNVRHRNLVKVITSCCSVDYKGDDFKALVMQFMANGNLDMSLYPNDEESGSSLTLLQRLTIAIDVASAMDYLHHDCDPPIVHCDLKPVNVLLDEDMVAHVADFGLARFLSQNQSEQQSSTMGLKGSIGYIPPEYGLGVKASTQGDVYSFGILLLEMFIAKKPTDEMFKEGLSLNKFISAMDENQVLNIADQRLIKDYEYSSQSSITDYHNELACVVQLINPKIDGL 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi976g00003 962 PANTHER LEUCINE RICH REPEAT KINASE 2 303 935 - -
Sebi976g00003 962 Gene3D Transferase(Phosphotransferase) domain 1 769 956 - -
Sebi976g00003 962 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Sebi976g00003 962 FunFam LRR receptor-like serine/threonine-protein kinase EFR 305 615 - -
Sebi976g00003 962 Pfam Protein tyrosine and serine/threonine kinase 685 905 IPR001245 GO:0004672|GO:0006468
Sebi976g00003 962 ProSiteProfiles Protein kinase domain profile. 682 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi976g00003 962 SMART serkin_6 682 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi976g00003 962 Gene3D Phosphorylase Kinase; domain 1 664 768 - -
Sebi976g00003 962 SUPERFAMILY L domain-like 341 596 - -
Sebi976g00003 962 Gene3D Ribonuclease Inhibitor 237 603 IPR032675 -
Sebi976g00003 962 FunFam LRR receptor-like serine/threonine-protein kinase EFR 653 768 - -
Sebi976g00003 962 ProSitePatterns Protein kinases ATP-binding region signature. 688 716 IPR017441 GO:0005524
Sebi976g00003 962 Gene3D Ribonuclease Inhibitor 26 175 IPR032675 -
Sebi976g00003 962 FunFam Leucine-rich repeat receptor protein kinase EMS1 206 304 - -
Sebi976g00003 962 Gene3D Ribonuclease Inhibitor 176 236 IPR032675 -
Sebi976g00003 962 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 769 956 - -
Sebi976g00003 962 SMART LRR_typ_2 93 116 IPR003591 -
Sebi976g00003 962 SMART LRR_typ_2 141 164 IPR003591 -
Sebi976g00003 962 SMART LRR_typ_2 388 411 IPR003591 -
Sebi976g00003 962 SMART LRR_typ_2 189 213 IPR003591 -
Sebi976g00003 962 SMART LRR_typ_2 285 311 IPR003591 -
Sebi976g00003 962 SMART LRR_typ_2 460 484 IPR003591 -
Sebi976g00003 962 SMART LRR_typ_2 532 555 IPR003591 -
Sebi976g00003 962 SMART LRR_typ_2 238 261 IPR003591 -
Sebi976g00003 962 Pfam Leucine rich repeat 462 521 IPR001611 GO:0005515
Sebi976g00003 962 SUPERFAMILY L domain-like 28 300 - -
Sebi976g00003 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Sebi976g00003 962 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 185 - -
Sebi976g00003 962 SUPERFAMILY Protein kinase-like (PK-like) 661 904 IPR011009 -
Sebi976g00003 962 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515
Sebi976g00003 962 Pfam Leucine Rich Repeat 534 556 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi976g00003 Sebi-Chr976 58293 61360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi976g00003 28 930 Receptor kinase-like Gene Family AT3G47570 42.827 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sebi976g00003 PK_Tyr_Ser-Thr 9.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi976g00003 - - gmx:100776054 1412.13