Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi975g00003 ATGTCCACCTCTTACCCTTACTCTCCACCACCCACCCCTTACCTCACCAATCTCGGCTTTGGCTATTCCATCGCCATCGCCCTCGGCTTCCTCTTCCTCCTCTCCACCCTCATCCTCTCCTCCTACCTCTGCTGCCGCACTATCCGCAACCGCCGCAACAACCACGCCCAATCAGACGGCGTCGTTTTGCCGCGCATAATCTTCGTGGCGGAAGACGAGGAGGAACGGCAGCAAGACGGCGTCGTATTGGGACTTGACCAGAACGTGATCAACTCGTACCCGAGATTCCAGTACGCGAAGGATGTGGGACAGGACAGCACGTGCTCGATCTGTTTGTGCGAGTACAAGGAGTCGGAGATGCTGAGGATGATGCCCGAATGTCGTCACTACTTTCACCTCTGTTGCCTTGACTCATGGTTGAAGCTCAATGGCTCATGCCCTGTTTGCCGTAATTCGCCTTTGCCGACGCCCATTTCTACGCCGTTGCAAGAAGTGGTGCCGCTCTCTCACTATCCCGCTGATAGAAGGGCTAGTAGGTGA 540 0.5593 MSTSYPYSPPPTPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRTIRNRRNNHAQSDGVVLPRIIFVAEDEEERQQDGVVLGLDQNVINSYPRFQYAKDVGQDSTCSICLCEYKESEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPISTPLQEVVPLSHYPADRRASR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi975g00003 179 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Sebi975g00003 179 Pfam Ring finger domain 107 150 IPR001841 -
Sebi975g00003 179 SMART ring_2 108 149 IPR001841 -
Sebi975g00003 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 154 IPR013083 -
Sebi975g00003 179 PANTHER RING-H2 FINGER PROTEIN ATL67 12 177 IPR044289 GO:0016567|GO:0016740
Sebi975g00003 179 SUPERFAMILY RING/U-box 91 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi975g00003 Sebi-Chr975 183355 183894 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi975g00003 14 172 C3H Transcription Factor Family AT5G06490 38.122 1.06e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi975g00003 - - vvo:131616597 281.182