Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi974g00002 ATGAGACGGATGAAGAAGGAGATTGAAGTTGAGGTTCTCCCCAATGATCAGAGTGAGTCACAGTTAAATGATGAGGGTTGTGAAGGAAGTGCCTATGGAGTTGTTCTGAAAAAAGGGCCATGGACACCTGCTGAAGATGATATTTTGGTGGATTATGTCAAGAAGCATGGGGAGGGGAACTGGAATGCTGTTCACAAGCACACGGGCCTGTTACGTTGTGGAAAAAGTTGTCGACTGCGGTGGACTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCGTTTACCACAGAGGAGGAGCGCTTGATTGCTGAGCTTCATGCAAAAATGGGAAACAAATGGGCACGCATGGCGGCACATGTTTTCATGAAATCTTTGAATTATATTTGCCATTGGGGATGTCACTGTTGTTATGCCTTCCATTTGCCTGGTCGGACAGATAATGAGATAAAGAACTATTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGATTGCCACTTTATCCTCCTGAAGTTTGTTTGCAAGCATTACAAGAGAGTCAGCATGGCCAAAACACTTGTGGAATTAATGGTGGCAATAAAGTGCATCCTGATTTCTTGCAGAAAAAGAGTTATGAGATACATGATGCAATATTTGACAGTCTGAAGGATAACCAGGGAAGCTTACCTTATGTGCCTGAGCTTCATGATATTTCTGATTATTGCAATATGCTGAAAGGTCTTGATTCTTCTCAATTTTGTTTTGTGCCATCAACACCATCTAACCATAAACGTCTTCGAGAGTCAACAATGCCATTTCTTGATTCCGGTGGTATGAACAGAAATGGTTTTTATCCATTTGATCATATTCAGGATAATACTTCTGATAAGATTGCACAATCATTTGGAATGCAATCACCCCTTGATCTTGGCCCCTCCTCACACAGCTCAATTTGTTACAGCCATTCCCTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTCCAGAGGCTGTGAAGTCGGAGCTCCCTTCACTCCAATATCCAGAAATTGATTTAGGTAGCTGGGGCACATCTCCCCCACCTCCTTTACTTGAGTCAGTTGATGATTTCATTCAGTCTCCTACGCCAATTAGTACACTGGACTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCTTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAAGAACCATTATTATGACAAGAGTTCAAATTCATCTACCGCAACTCCTGGCGACAGAGTGGACAGCTCTGCTCTGAACATGTATGACACAGAATTGGAAGACTATGCTGACACTGTATCTCCATTTGGTGCATCTTCAATATTGAATGAGTGCCCTGCTGTTAGTGCCAATGTAATGAATTCATTGGATGAACAGCTACCTGTTCAAACCTTTAATGGCAACATTGTGAAATTAGAGTATGTTGACCAGGTTTGGACCCCTGATAGTGAAAATCAAACCATGTCTCTGTTGAATGTTACTCGGCCAGACTTCTTGCTTGCTTCAGATTGGTATGAGCTAGGTTCTGGGCATGGCAAGAACCAAGCCATCATGACTGATGCTACATCAACCCTTCTTGGAGATGATATAGCCACTGACTATAAACATATGACTGCTGGAACTTCTAAATCAAGTCAGGTATGGGAGTTTGGTTCTTGTGCATGGAACAACATGCCTGCTCTTTGTCAAGTGTCTGATCTTGGTTAA 1725 0.4278 MRRMKKEIEVEVLPNDQSESQLNDEGCEGSAYGVVLKKGPWTPAEDDILVDYVKKHGEGNWNAVHKHTGLLRCGKSCRLRWTNHLRPNLKKGAFTTEEERLIAELHAKMGNKWARMAAHVFMKSLNYICHWGCHCCYAFHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQALQESQHGQNTCGINGGNKVHPDFLQKKSYEIHDAIFDSLKDNQGSLPYVPELHDISDYCNMLKGLDSSQFCFVPSTPSNHKRLRESTMPFLDSGGMNRNGFYPFDHIQDNTSDKIAQSFGMQSPLDLGPSSHSSICYSHSLSNGNSSTSKPTPEAVKSELPSLQYPEIDLGSWGTSPPPPLLESVDDFIQSPTPISTLDSDCSSPQNSGLLDALLYQAKTLSSSKNHYYDKSSNSSTATPGDRVDSSALNMYDTELEDYADTVSPFGASSILNECPAVSANVMNSLDEQLPVQTFNGNIVKLEYVDQVWTPDSENQTMSLLNVTRPDFLLASDWYELGSGHGKNQAIMTDATSTLLGDDIATDYKHMTAGTSKSSQVWEFGSCAWNNMPALCQVSDLG 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi974g00002 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 89 IPR017930 -
Sebi974g00002 574 CDD SANT 40 85 IPR001005 -
Sebi974g00002 574 CDD SANT 93 155 IPR001005 -
Sebi974g00002 574 SUPERFAMILY Homeodomain-like 39 115 IPR009057 -
Sebi974g00002 574 FunFam MYB-related transcription factor 37 90 - -
Sebi974g00002 574 ProSiteProfiles Myb-like domain profile. 86 157 IPR001005 -
Sebi974g00002 574 Gene3D - 37 90 - -
Sebi974g00002 574 Gene3D - 93 160 - -
Sebi974g00002 574 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 531 - -
Sebi974g00002 574 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Sebi974g00002 574 Pfam Myb-like DNA-binding domain 91 155 IPR001005 -
Sebi974g00002 574 SMART sant 37 87 IPR001005 -
Sebi974g00002 574 SMART sant 90 159 IPR001005 -
Sebi974g00002 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 161 IPR017930 -
Sebi974g00002 574 ProSiteProfiles Myb-like domain profile. 36 85 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi974g00002 Sebi-Chr974 70559 74610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi974g00002 15 573 MYB Transcription Factor Family AT5G06100 41.259 9.64e-121 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi974g00002 Myb_DNA-binding 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi974g00002 K09422 - gmx:100810415 840.491