Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi96g00102 ATGACTAGAAAGAAGGTGGAGCTAGCATTCATAACCAATGACTCTGCGAGGAAGGCAACATTCAAGAAAAGGAAAAAGGGTCTAATGAAGAAGGTTGGTGAACTTAGCACCCTTTTTGGGATTGATGCATGTGCTATAGGTTATAGTCCTTATGATCCTCAGCCAGAGGTTTGGCCATCCCCAATAGGTGTCCAACGTGTGCTTTCAAAGTTCAGGAGAATGCCTGAATTGGAGCAGAGTAAGAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAGAGGATCCAGAAGGCCAAAGAACAGGTGAAGAAACAGAGGAAGGATAACAGGGAAAAGGAGATGACCCAACTCATGTTTCAGTGTCTAAGTGCAGGTAACATTATGCAAAATATAAGTATGGTTGATTTGAATGATTTGGCATGGTTGATTGACCAGAACTTGATAGTATAA 447 0.4206 MTRKKVELAFITNDSARKATFKKRKKGLMKKVGELSTLFGIDACAIGYSPYDPQPEVWPSPIGVQRVLSKFRRMPELEQSKKMVNQESFLRQRIQKAKEQVKKQRKDNREKEMTQLMFQCLSAGNIMQNISMVDLNDLAWLIDQNLIV 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi96g00102 148 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Sebi96g00102 148 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi96g00102 148 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi96g00102 148 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sebi96g00102 148 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Sebi96g00102 148 PANTHER MADS BOX PROTEIN 3 116 - -
Sebi96g00102 148 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Sebi96g00102 148 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Sebi96g00102 148 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sebi96g00102 148 Coils Coil 87 114 - -
Sebi96g00102 148 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi96g00102 Sebi-Chr96 1968159 1968605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi96g00102 1 146 Type I MADS-box Gene Family AT5G48670 67.808 1.08e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi96g00102 SRF-TF 1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi96g00102 - - gmx:100813231 259.996