Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi96g00080 ATGGCAGCTTTGCGAGAAATTTTTGGGGCCTTAATCTCTCCGTTAAAGCAACATGCTTTTCTCTCTCAATTTATCCTCCTCCGAAGAATGACTTCCAAGATTTTTGTTAAAGGTTTAGCATTTTCTACTACAGAGGAGAAATTAGCCGAAGTTTTTTCTCAATATGGCAAAGTCCTGAAAGCTGATATAGTGCTGAATAAAGCTAAAAATAGATCCAAAGGTTTTGGGTATGTGACTTTTGCTAAGGAGGAAGAAGCCCGCAAGGCACAGATTGACATGAATAGAAAGGCCAGGATCTACTAA 303 0.3894 MAALREIFGALISPLKQHAFLSQFILLRRMTSKIFVKGLAFSTTEEKLAEVFSQYGKVLKADIVLNKAKNRSKGFGYVTFAKEEEARKAQIDMNRKARIY 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi96g00080 100 SMART rrm1_1 33 100 IPR000504 GO:0003723
Sebi96g00080 100 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 96 IPR000504 GO:0003723
Sebi96g00080 100 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 95 - -
Sebi96g00080 100 SUPERFAMILY RNA-binding domain, RBD 32 96 IPR035979 GO:0003676
Sebi96g00080 100 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 100 IPR000504 GO:0003723
Sebi96g00080 100 Gene3D - 27 99 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi96g00080 Sebi-Chr96 1550391 1552486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi96g00080 34 89 C2H2 Transcription Factor Family AT2G19380 39.286 3.13e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi96g00080 - K13195 gmx:100527061 132.88