Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi96g00078 ATGGAGCTGCCCACAACAAATATAGACCTTGGGCATGAGAAGATTGGAAATGAGAAAGAGGGAGGACCCTTGCTCCATTGTGATCTATGTGACACAGAGTTAGTTCACAAGCTGGCTCAAATGTTCCTGCCAGGACTAGCCTCTGCCTGTGTTGATAACACAACAGGAGATCCCTTCAAGTCTCCTGGTTCAGTGGCTGTTGATTTGAGGAAGGAAATGATAGATTTCCTTACCCAGAGAAGTGAATCATTTGTTGCTGAGTCTGTTATCTTAGAAGCTGATCCTGATGGTGAAGTGTTGGATCATCCTTTTGATATTATTTCTTATTTTGTCGATGAATTTGTAAATTCAAAGAGGAATTTGTTGAGTCAGGTTTCAGGATGGCTGCTAAGTGAGTTGAGAGAAGACAAAATAGATGATTTTGTTCAAGAGATGGAAATGAATGGTTTTTGGTCATTAGATAGAAGAGAAAAGGTTGCAGAAACTTTGCTTAAGAATGTTGACTTCAAGAACTCATTTCACTGCAGCATGAGTTTCAATTCTGCAGAAGATCTTGCAAACCATGTTGATAATTGCAACTTCAGACCTATGATCTGCCAAAATGAGGGATGCAATGCCAGATTTAGCACAGGTCAATTGAAGGAGCATGATTCAACTTGTCCTTTTAAGATAATTCCTTGTGAACAGAAGTGTACAGATAGCATTATAAGACGTGAGATGGACAGGCACTGCATAACTGTTTGTCCAATGAAACTTGTGAATTGTCCTTTCTATGCAGTGGGTTGTCAATCTGCTATTGCACAATGTTTGGTTGGAAAACATTGTTCAGATGACCTTCATTCTCACTTATTGCACATGCTTAAAGGCATCCACAGGGAAGCATCTGGTGAAGATCTCAAACGACGAGTAGAGAAAATTGTACAGGCTTCATCAAGCAGCAGGTTAGCAGAAGCCCACGATGTGAGATCTTTAAAAATTATTGTCAAAGATCTTGAAGCTAAGCTAGGGCCTTTGGAAATGAGTGACATGGAGAAAACTAGTGCGGAAACAGTTGTCAAGAGTGAAGACAGTAGCACCAAAACAAAGGGCGGTGAACAGAGCACACAAGCTCTAAATTCATCAGATAAAGCTGAAACGAGTGCTATCTTGAATAAGAATAGTGCAGAGAATGCTGTGAATAATAAAGATGGTGAGCATAAGGAAAATGGAAAGTAA 1215 0.4 MELPTTNIDLGHEKIGNEKEGGPLLHCDLCDTELVHKLAQMFLPGLASACVDNTTGDPFKSPGSVAVDLRKEMIDFLTQRSESFVAESVILEADPDGEVLDHPFDIISYFVDEFVNSKRNLLSQVSGWLLSELREDKIDDFVQEMEMNGFWSLDRREKVAETLLKNVDFKNSFHCSMSFNSAEDLANHVDNCNFRPMICQNEGCNARFSTGQLKEHDSTCPFKIIPCEQKCTDSIIRREMDRHCITVCPMKLVNCPFYAVGCQSAIAQCLVGKHCSDDLHSHLLHMLKGIHREASGEDLKRRVEKIVQASSSSRLAEAHDVRSLKIIVKDLEAKLGPLEMSDMEKTSAETVVKSEDSSTKTKGGEQSTQALNSSDKAETSAILNKNSAENAVNNKDGEHKENGK 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi96g00078 404 MobiDBLite consensus disorder prediction 361 391 - -
Sebi96g00078 404 SUPERFAMILY TRAF domain-like 183 227 - -
Sebi96g00078 404 ProSiteProfiles Zinc finger TRAF-type profile. 216 262 IPR001293 GO:0008270
Sebi96g00078 404 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 24 397 - -
Sebi96g00078 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 280 IPR013083 -
Sebi96g00078 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 218 IPR013083 -
Sebi96g00078 404 MobiDBLite consensus disorder prediction 339 404 - -
Sebi96g00078 404 MobiDBLite consensus disorder prediction 346 360 - -
Sebi96g00078 404 Pfam TRAF-type zinc finger 216 268 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi96g00078 Sebi-Chr96 1528055 1531549 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi96g00078 zf-TRAF 2.2e-10 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi96g00078 - - gsj:114391789 628.632