Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi96g00077 ATGTTGGTTGACTATGATGACGTGGCAATGTCGTTAAAGATCCCCATAGTAAGCCATGCAACCGCATGTACCAAAGCAGGGCCTAGCCAGGAAGAAGTTTCTGGAACACAGAAGAATGAGGTTGGAAATATAAGGAACGAATTTACTAAGGAACCGTATAACGACATCAACATGCGGGGTAGAAGCTACAGTTACAGTCCCTCACCTCCAAGGCGTTACAGCCGAAGAAGGCGCAGTCCTAGCCCTAGGGGTCGTTACGGAGGCCGTGGTAGGGATTTGCCAACTAGTCTCCTGGTCCGGAACCTCCACAGAGATTGCAGGTCAGAAGACCTGCACGGTCGGTTTGGCCAATTTGGTCCTCTCAAGGATGTTTACCTGCCTCGTGATTATTATACTGGGGAACCAAGAGGTTTTGGGTTTGTTCAATATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGATGGGCAAATTCTTCTTGGCCGTGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGAAAGAAACCTGCAGAAATGAGAGCAAGGGAACGGATCGGTCATATGAATATAGGAGATCTCGTTCACCACGCTATGGACGAACATATTCCCCTAGTCCAGATTATTCACCTTCTCCACATCGAAGGCGATATTCCAGGTCAATCTCACCAAGAGACAGAAGGTATAGGAGGCGATCATACTCTAGATCACCTTATGGATCAAGAAGCCGGAGTCCTGGTTACTCTCGGTGATTAA 759 0.4756 MLVDYDDVAMSLKIPIVSHATACTKAGPSQEEVSGTQKNEVGNIRNEFTKEPYNDINMRGRSYSYSPSPPRRYSRRRRSPSPRGRYGGRGRDLPTSLLVRNLHRDCRSEDLHGRFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPAEMRARERIGHMNIGDLVHHAMDEHIPLVQIIHLLHIEGDIPGQSHQETEGIGGDHTLDHLMDQEAGVLVTLGD 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi96g00077 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 173 IPR000504 GO:0003723
Sebi96g00077 252 Gene3D - 26 186 IPR012677 -
Sebi96g00077 252 SMART rrm1_1 96 169 IPR000504 GO:0003723
Sebi96g00077 252 MobiDBLite consensus disorder prediction 26 43 - -
Sebi96g00077 252 SUPERFAMILY RNA-binding domain, RBD 56 183 IPR035979 GO:0003676
Sebi96g00077 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 166 IPR000504 GO:0003723
Sebi96g00077 252 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 94 187 - -
Sebi96g00077 252 MobiDBLite consensus disorder prediction 26 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi96g00077 Sebi-Chr96 1484967 1487335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi96g00077 89 158 Eukaryotic Initiation Factors Gene Family AT3G11400 41.429 1.24e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi96g00077 K12900 - jre:108985117 200.29