Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi96g00073 ATGTCTGCAACTATGAGAACTTCATGGGCAGATTCTGCTGACAATACCAATGGTTCTTCCAATAACAATGCCTCGGCACGCCGGTCAGCATATGTTCCTCCACATCTTCGAAACCGGCCATTGTCTTCGGAGCCCCCTGCACCTGCAACATCATACTCATCTTCTTTGCAGGCTAATGACAGGGGAAATTATGGTGGTCCGGCCTCTGGTCCTCATGGGGGAAGCTTCTCTAGGCCTGATCATGGTCGGCAAGGAGTTGGTTCAAATGCTCAAACTGGTGCTGGCTGGAACAGTAGAGGGCCAGGGAGGGACCGTGGGAGGCGTGAGGTGAATCCTTTTGAGAATGATGAAGCTGCAGATCAATCTTTTGGTGACACTGACCAAGAGAACACTGGCATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGGGAGAATGTTCCCCCACCTGTGAATACATTCGCAGAAATAGATTTGGGGGAGGCAGTGAATCAAAACATACAAAGATGCAAGTATGTCAAACCAACCCCAGTTCAGAGGTATGCCATACCAATTTCTCTTGCGGGGCGAGATTTGATGGCTTGTGCTCAGACAGGGTCAGGAAAGACAGCTGCCTTTTGCTTTCCTATTATAAGCGGAATCATGAGAGAGCAGTATGTTCAAAGACCGCGTGTAGCACGAACTGCTTTCCCTCTGGCACTTATCCTCTCCCCTACCCGGGAGCTTTCATGCCAGATACATGATGAGGCCAGAAAGTTTTCTTATCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCCCCAATCACCCAGCAGGTAATAATGTTGGGTCACATTATTCAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCAACTCCTGGACGATTAGTAGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCACAAATAAGAAAGATAGTTGAACAGATGGACATGCCTCCCCCAGGCATGAGACAGACACTGCTGTTTAGTGCCACATTTCCCAAAGAGATACAGGGACTGGCATCAGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTGATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTTATGGACCTTCTTCATGCTCAGAGGGAAAATGGAATTTATGGCAAGCAAGGTCTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGACGCGTTGGAACACTGCTTATGTGTTAATGGGTTTCCTGCAACTTGCATTCATGGCGACAGGACACAACAAGAAAGAGAACAAGCACTGAGGTCGTTCAAGAGTGGAAACACACCGATTCTAGTGGCAACGGATGTTGCAGCACGTGGTCTTGATATTCCAAGGGTAGCACATGTGGTAAATTTTGATCTCCCCAATGACATTGATGATTATGTGCACAGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCCTTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGTCTGGCTCACCCGTTATGCAGCAAGGGCTTCTTACGGTGGTGGCAACAGAAATAGGCGGTCAGGGGGCCGTTTTGGTGGCCGCGATTTTAGGAAGGAGGGCTCATATAATAAAGGAACAGATTATTATGGTGGTGGAACTGGTGGATATGGGGTTCCTGGCAATTATGGTGGCGGGTATGGTCAAGGTGTGACAAGTGCTTGGGATTAG 1860 0.472 MSATMRTSWADSADNTNGSSNNNASARRSAYVPPHLRNRPLSSEPPAPATSYSSSLQANDRGNYGGPASGPHGGSFSRPDHGRQGVGSNAQTGAGWNSRGPGRDRGRREVNPFENDEAADQSFGDTDQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGEAVNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRVARTAFPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPITQQVIMLGHIIQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQGLASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIYGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSLAKPLADLMQEANQEVPVWLTRYAARASYGGGNRNRRSGGRFGGRDFRKEGSYNKGTDYYGGGTGGYGVPGNYGGGYGQGVTSAWD 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi96g00073 619 MobiDBLite consensus disorder prediction 44 62 - -
Sebi96g00073 619 CDD DEADc_DDX3_DDX4 156 385 IPR044763 GO:0003724|GO:0005524
Sebi96g00073 619 Gene3D - 110 381 IPR027417 -
Sebi96g00073 619 Pfam DEAD/DEAH box helicase 179 366 IPR011545 GO:0003676|GO:0005524
Sebi96g00073 619 MobiDBLite consensus disorder prediction 101 115 - -
Sebi96g00073 619 FunFam ATP-dependent RNA helicase RhlB 382 561 - -
Sebi96g00073 619 Gene3D - 382 562 IPR027417 -
Sebi96g00073 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 379 IPR014001 -
Sebi96g00073 619 CDD SF2_C_DEAD 391 527 - -
Sebi96g00073 619 SMART helicmild6 437 518 IPR001650 -
Sebi96g00073 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 406 557 IPR001650 -
Sebi96g00073 619 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 123 557 - -
Sebi96g00073 619 MobiDBLite consensus disorder prediction 82 96 - -
Sebi96g00073 619 Pfam Helicase conserved C-terminal domain 404 518 IPR001650 -
Sebi96g00073 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 533 IPR027417 -
Sebi96g00073 619 SMART ultradead3 174 394 IPR014001 -
Sebi96g00073 619 FunFam Probable ATP-dependent RNA helicase DDX4 116 381 - -
Sebi96g00073 619 MobiDBLite consensus disorder prediction 1 151 - -
Sebi96g00073 619 MobiDBLite consensus disorder prediction 1 28 - -
Sebi96g00073 619 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi96g00073 Sebi-Chr96 1423033 1429245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi96g00073 153 551 Eukaryotic Initiation Factors Gene Family AT3G19760 30.597 3.43e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi96g00073 K11594 - gmx:100818326 927.546