Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi96g00057 ATGTTGTGTTGCGGGGGTGCAGAAGAAGATATCAGCGGTCTACCTGCAAACCATTACAATTCATCACCTAGAGGGGGTAATACATACGGTGGTGGAGGAGGTAACATGCTCTTTTTTGCGTTAGCGGGTGACAGAGGAGAGCCAAAGGGCAATGTTGTTAAGAGTGGTGCTCCACAGAAAGCATTACCAATTGAGATACCCGCTATTCCATTGGATGAGTTAAATCGGTTTACAGACAACTTTGGTACAAAGGCTTTGATTGGAGAAGGTTCCTATGGGAGGGTTTACCATGCAAAGTTGAGCAATGGTTTAGATGCTGCAATTAAGAAGCTGGATACTAGTTCTTCACCAGAACCTGACTCTGATTTTGCAGCACAGTTATCAGTTGTTTCACGACTAAAGCATGACCATTTTGTGGAGTTGATGGGATATTGTCTGGAGGCAAATAACAGGATTTTGGTTTATCAATATGCAAGTCTGGGTTCTTTGCATGACATATTACATGGAAGGAAAGGAGTGCAAGGAGCTGAACCTGGTCCAGTTTTGAACTGGAACCAAAGAGTAAAAATTGCTTTTGGTGCAGCAAAAGGACTTGAGTTTCTTCATGAGAAGGTTCAGCCTTCTATAGTTCATCGCGATGTTAGATCTAGCAATGTGTTATTGTTCAATGACTATGAGGCTAAGATTGCAGATTTCAGTTTGACAAATCAGTCTTCTGACACAGCAGCCAGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCTGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGCGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTGGACCATACAATGCCCAAAGGGCAACAAAGTCTTGTAACATGGGCAACTCCGAGACTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTACCCGCCAAAGGCCATTGCTAAGTTGGCAGCGGTTGCAGCACTTTGTGTTCAGTATGAAGCTGACTTTAGGCCAAACATGACGATTGTTGTCAAAGCTCTTCAGCCACTTCTCAATTCAAAACCGGCAGGTCCTGAATCTAGTGCTTGA 1125 0.4364 MLCCGGAEEDISGLPANHYNSSPRGGNTYGGGGGNMLFFALAGDRGEPKGNVVKSGAPQKALPIEIPAIPLDELNRFTDNFGTKALIGEGSYGRVYHAKLSNGLDAAIKKLDTSSSPEPDSDFAAQLSVVSRLKHDHFVELMGYCLEANNRILVYQYASLGSLHDILHGRKGVQGAEPGPVLNWNQRVKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPESSA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi96g00057 374 Pfam Protein tyrosine and serine/threonine kinase 85 359 IPR001245 GO:0004672|GO:0006468
Sebi96g00057 374 Gene3D Phosphorylase Kinase; domain 1 54 157 - -
Sebi96g00057 374 SMART tyrkin_6 81 359 IPR020635 GO:0004713|GO:0006468
Sebi96g00057 374 Gene3D Transferase(Phosphotransferase) domain 1 159 370 - -
Sebi96g00057 374 ProSitePatterns Tyrosine protein kinases specific active-site signature. 209 221 IPR008266 GO:0004672|GO:0006468
Sebi96g00057 374 SUPERFAMILY Protein kinase-like (PK-like) 61 359 IPR011009 -
Sebi96g00057 374 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 23 367 - -
Sebi96g00057 374 FunFam probable protein kinase At2g41970 54 157 - -
Sebi96g00057 374 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Sebi96g00057 374 FunFam PTI1-like tyrosine-protein kinase 3 159 368 - -
Sebi96g00057 374 ProSiteProfiles Protein kinase domain profile. 81 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi96g00057 Sebi-Chr96 1044000 1046013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi96g00057 72 362 Trihelix Transcription Factor Family AT5G38560 44.781 1.06e-84 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Sebi96g00057 PK_Tyr_Ser-Thr 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi96g00057 - - gmx:100786291 641.728