Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi96g00056 ATGGCTCCAGGAGGCAGTTCTTTCAAAGAAGTTCTTGAGTCTCACCAGATATTTTCAGATTATGAGACCACTAAGGCTAAATCGGAGGCTAATGGTAATAGTACATTCACAAAATCTAGGGGCGGATTGGGTGGAAAGCATGGAATTAATTCGAAGAATGGTGTCTATGACTTACTTGAGTGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCATCAGTGCCCAAATGGCCACACGTTATGTTTAAGTTGTAAGATTGCAGTGCATAACTGTTGCCCAACATGTCACCATGATCTTGGGAATATAAGGTGTTTGGCTCTAGAGAAAGTGGCGGAAACGATGGAGCTTCCTTGCAGATATCAAAATCTAGGTTGTCATGATATATTCCCATACTACACTAAGCTTAAACATGAGCAAAATTGTCCATTTCGTCCATACAGTTGCCCCTATGCTGGATCAGAGTGCTCTGTGATGGGTGACATTCCAACTCTTTTGGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTTAACCATCGATATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTTAATTGTTTTGGAAGGCATTTCTGTTTGCATTTTGAGGCATTTTTGCTCGGCACAGCTCCAGTTTATATGGCTTTTTTACGATTTTTGGGTGATGACAATGAGGCAAGTAAATTCAAGTACAGTTTGGAAGTTGGTGCAAATAGCCGCAAACTTATATGGCAAGGAATTCCAAGGAGTATTCGTGATAGTCATAGAAAAGTTCGTGACAGTCAAGATGGACTCATCATTCAGAGGAACCTAGCTCTTTATTTTTCTGGTGGGGATAGGCAACAATTAAAGTTGAGGATCACTGGTCGTATATGGAAAGAAGATTGA 930 0.4075 MAPGGSSFKEVLESHQIFSDYETTKAKSEANGNSTFTKSRGGLGGKHGINSKNGVYDLLECPVCKNLMYPPIHQCPNGHTLCLSCKIAVHNCCPTCHHDLGNIRCLALEKVAETMELPCRYQNLGCHDIFPYYTKLKHEQNCPFRPYSCPYAGSECSVMGDIPTLLAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFLLGTAPVYMAFLRFLGDDNEASKFKYSLEVGANSRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQQLKLRITGRIWKED 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi96g00056 309 SUPERFAMILY TRAF domain-like 117 305 - -
Sebi96g00056 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 169 IPR013083 -
Sebi96g00056 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Sebi96g00056 309 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Sebi96g00056 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 302 IPR008974 GO:0005515
Sebi96g00056 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 112 - -
Sebi96g00056 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 115 IPR013083 -
Sebi96g00056 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Sebi96g00056 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 308 - -
Sebi96g00056 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Sebi96g00056 309 CDD RING-HC_SIAHs 59 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi96g00056 Sebi-Chr96 1036473 1039638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi96g00056 1 309 C3H Transcription Factor Family AT2G41980 79.935 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi96g00056 K04506 - qsa:O6P43_005820 580.096