Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi96g00050 ATGGGGGAACGAACATCCGATGCAAATGCAATGAACCTTGATTTGAATCTGGGCCCAGGCCCAGGCTCAGAGCCCTTAGCTGGTGCCATGGCCAGTGAAGCTTTGAACATGGATGATTGGATTGAGGAACCTTTTAACAGAATTAGCGAAGCAATGAGGCGTAGGGCACGACATCGGCGGCGATGGCGCCATTATCACCAACGTCATCATGCTCTTCATGATTTTCCTGAACCTCAAGTTCATGATATCCCAAGTGAAGCTTGGTGGCGCCAATTTGTCACCGCAGAAAATATGTCTTTTGAATTGAATCACTTTTTGGCTAATCCTGGCAATGGAAGTGTGCTGCAGGCTGGGGAAGGCAGTGTGACAGCTGAGGAAAGAGCAGAGGAGGTGCCAAAGGCATGTGACATTAACAACTGTGGTGTTACATTGGATGAGACATCAGAGAAGGAGAAGGATGTTGAAAAGGGCCGTGGTAGTGATGGGGGGTTTTTCGATTGCAATATTTGTTTGGACCTGGCTAAGGAGGCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTGTATATACATGGCTGCATTTGCATTCGGATTCTAAGGAATGTCCAGTTTGCAAGGGAGAAGTTACTGTTGAAAGTGTTACCCCGATATATGGTCGTGGGAACAATGCCCATGTTCCTGAGGAGAATTCCACCCTGAAAATCCCTCTCAGGCCTAATGCAAGGCATGTCTCAGAGGATTCAACTTTGAGACAAAACATTCAAAGGAATGTGTTTGCTATGCCTGTGGAAGAGATGATTCAGCGTCTTGGAAGCAGACTCGATCTTAATCAGGATTTAGTTCAGCCAAATGAGCATGACAATGCACGCGAAACAGGAGAGAGGGCTAGTTCCTTGTTGAGTAGGTCTATGGCAGCTAGGCTTCCTAGATATGTTAGGAGAGAGCATAACCTTGGTGCAGCACCCCCTGAGGATGCAGTGAGTTTAACACAGAACAGTATAGGCGGTTCTTTGGTAGGGGATAGCCGCAGGGTACAATCCCTTTTGCTTCGAAGAATGCAAGCACATAGAGGAACCTTTTCATCAACATTGAGCTCTGCTGAAAGGTTGGTTGAGGCATATTTCCATAGCAATCCGTTAGGTAGAAACCGAGAACAACCTCCTCCTGTTGAAGACAGGGATTCCTTTTCTAGCATTGGTGCTGTCATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTGTCCTTGTCAACATCCACTTCCAGGAGGAGAAATGATGCTTCAAGAGTGTCTGATGTCGATAGTGGAGATTCTCGTGCTCCAAGGCGAAGACGTTTGAACTAA 1365 0.4645 MGERTSDANAMNLDLNLGPGPGSEPLAGAMASEALNMDDWIEEPFNRISEAMRRRARHRRRWRHYHQRHHALHDFPEPQVHDIPSEAWWRQFVTAENMSFELNHFLANPGNGSVLQAGEGSVTAEERAEEVPKACDINNCGVTLDETSEKEKDVEKGRGSDGGFFDCNICLDLAKEAVVTCCGHLFCWPCVYTWLHLHSDSKECPVCKGEVTVESVTPIYGRGNNAHVPEENSTLKIPLRPNARHVSEDSTLRQNIQRNVFAMPVEEMIQRLGSRLDLNQDLVQPNEHDNARETGERASSLLSRSMAARLPRYVRREHNLGAAPPEDAVSLTQNSIGGSLVGDSRRVQSLLLRRMQAHRGTFSSTLSSAERLVEAYFHSNPLGRNREQPPPVEDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSTSRRRNDASRVSDVDSGDSRAPRRRRLN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi96g00050 454 ProSitePatterns Zinc finger RING-type signature. 182 191 IPR017907 -
Sebi96g00050 454 MobiDBLite consensus disorder prediction 432 454 - -
Sebi96g00050 454 SMART ring_2 167 207 IPR001841 -
Sebi96g00050 454 MobiDBLite consensus disorder prediction 1 22 - -
Sebi96g00050 454 Pfam Zinc finger, C3HC4 type (RING finger) 167 207 - -
Sebi96g00050 454 ProSiteProfiles Zinc finger RING-type profile. 167 208 IPR001841 -
Sebi96g00050 454 SUPERFAMILY RING/U-box 164 220 - -
Sebi96g00050 454 CDD RING-HC_RNF5-like 165 208 - -
Sebi96g00050 454 MobiDBLite consensus disorder prediction 422 454 - -
Sebi96g00050 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 221 IPR013083 -
Sebi96g00050 454 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 143 340 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi96g00050 Sebi-Chr96 873317 874681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi96g00050 1 445 C3H Transcription Factor Family AT3G58030 47.629 2.85e-115 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi96g00050 K10666 - gmx:100811099 568.155