LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi96g00042	ATGCACTTGTCTTGGCTAGTACAATATCAATTCTTAGCAGTCATCTTCAGTATCATAGCCTATACAGAAGTTGGCTGCTTTTACTTCAATTTCCCTACCTTCCAACCACATGATGAAGCAAATTTGTTGCTAAGCAAAAACTCAAAAATATACTTAGATGCCATCCAAATAACCCCTGATATTCGTGGTGAGATAAAGAATTATTCAGGACGTGCTTTTTACAAAAAGCCATACAGACTTTGGAAGAATGACAAAATTGCTTCCTTCAACACCACTTTTGTGCTTAACATCAGCCCCCAAACATCCCCTGGTGGAGAAGGTTTGGCCTTTATCTTAACTGCAGATCCCACTCTCCCAGAAAACAGTGCAGGAGAATGGCTAGGAATTGTGAATGCTACTACCAATGGAACTTCTCAAGCTGGAATTCTAGCAGTGGAGTTTGACACAAGAAAAAGTTCCACAGAAGATGGCCCTAACAACCATGTTGGCATCAACATAAATAGCATCTACTCTTTCAAACAGGTACCATTAATAAACACTAGGGTCAATATTTCATCAGGTATAAATGTAACTGTGAGAATTCAGTATGCCAATGATACTATATCTGTTTTTGGTTCCATGAGTGGAACTTCAGAGATGGAGACCCTTTTGGTATCTCCACCTCTTAATCTATCTTCCTATCTTCAAGAAAAGGTTTATCTTGGTTTCTCTGCTTCAACAAGCAATTTCACAGAGCTGAACTGTGTAAGAGCATGGGAATTCAATGGTGTAGATATTGCAGATGGTAATAAAAATCTGTTATGGGTTTGGATCATGGTTCCAACTGTGATTATCATTGGTGGGTTGGTACTATATTTCTTGCTTTGGAAAAGGAAAAGAAACATGGAGAAGCCAGAAGATGCATATCCAAGGATAGAGGATCAGATTCAACACTCCTCTATGGCTCCAAAGAAGTTTCAACTAAGGGAAATAAAAAAAGCAACAGGTGGATTCAGCCCTCAAAACAAGCTTGGTGAAGGTGGATTTGGAACTGTCTATAAGGGTCTCCTAGGAAACAAGGAGGTAGCAGTGAAGAGAGTTTCCAAGAACTCACGTCAAGGGAAGCAAGAATTCATAGCTGAAGTGACAACAATTGGAAGCCTTCACCACAGAAACTTAGTGAAACTGATAGGATGGTGCTATGAGAACAGAGAACTCCTCCTTGTATATGAGTTCATGCCAAATGGAAGCCTAGACAAGTACCTATTTGGTGATAACAAAGTTGGTAATGGCCTTGGAAGGGGATATTCAACACTGAATTGGGAAACTAGACATAGTGTGATTCATGGGGTTGCACAAGCATTGGACTATCTTCACAATGGGTGTGAAAAGAGGGTCCTTCACAGAGACATTAAGGCAAGCAACATAATGTTGGACTTAGATTACAATGCTAAATTGGGAGACTTTGGACTTGCTCGTACCATTCAGAAGAGAAATGAAACTCACCACTCCACAAAGGAAATTGCAGGAACACCAGGTTATATGGCTCCAGAGACCTTTCTTACAGGAAGGGCAACAGTGGAAACTGATGTGTATGCATTTGGTGTTCTTGTGTTGGAGGTTGTGTGTGGAAAGAGGCCAGGGAATATGTATGCACAAGATGATTATAAGAACAGTCTTGTGTATTGGGTTTGGGAGCTTTATGGAAAGGGTAGAATAGTTGGTGCTATGGATGCAAAGATGAGTAAGGAGGAGGAGATTAAGGAGGAAGAAGTGGAGAGTGTGCTTGTGCTTGGGTTGGCTTGTTGCCATCCAAACCCACACCAGAGACCATCTATGAGAACTGTTTTGCAGGTTCTGAATGGAGAAGCATCTCCACCAATGGTTCCAAAGGAAAGACCTGCTTTTGTGTGGCCTGCAATGCCCCCATCATTCAAAGAAGATGAAGATAGCTCTCTTGTCCAGGGATCTCTCACTCCAATATTCACTGATATCACTGGCAGATAG	1986	0.4129	MHLSWLVQYQFLAVIFSIIAYTEVGCFYFNFPTFQPHDEANLLLSKNSKIYLDAIQITPDIRGEIKNYSGRAFYKKPYRLWKNDKIASFNTTFVLNISPQTSPGGEGLAFILTADPTLPENSAGEWLGIVNATTNGTSQAGILAVEFDTRKSSTEDGPNNHVGININSIYSFKQVPLINTRVNISSGINVTVRIQYANDTISVFGSMSGTSEMETLLVSPPLNLSSYLQEKVYLGFSASTSNFTELNCVRAWEFNGVDIADGNKNLLWVWIMVPTVIIIGGLVLYFLLWKRKRNMEKPEDAYPRIEDQIQHSSMAPKKFQLREIKKATGGFSPQNKLGEGGFGTVYKGLLGNKEVAVKRVSKNSRQGKQEFIAEVTTIGSLHHRNLVKLIGWCYENRELLLVYEFMPNGSLDKYLFGDNKVGNGLGRGYSTLNWETRHSVIHGVAQALDYLHNGCEKRVLHRDIKASNIMLDLDYNAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGKRPGNMYAQDDYKNSLVYWVWELYGKGRIVGAMDAKMSKEEEIKEEEVESVLVLGLACCHPNPHQRPSMRTVLQVLNGEASPPMVPKERPAFVWPAMPPSFKEDEDSSLVQGSLTPIFTDITGR	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi96g00042	661	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	316	405	-	-
	Sebi96g00042	661	ProSitePatterns	Protein kinases ATP-binding region signature.	337	358	IPR017441	GO:0005524
	Sebi96g00042	661	ProSiteProfiles	Protein kinase domain profile.	331	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi96g00042	661	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	256	IPR013320	-
	Sebi96g00042	661	FunFam	probable L-type lectin-domain containing receptor kinase S.5	406	619	-	-
	Sebi96g00042	661	Gene3D	Phosphorylase Kinase; domain 1	316	405	-	-
	Sebi96g00042	661	Pfam	Legume lectin domain	29	261	IPR001220	GO:0030246
	Sebi96g00042	661	Pfam	Protein kinase domain	334	611	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi96g00042	661	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	26	263	-	-
	Sebi96g00042	661	CDD	STKc_IRAK	337	615	-	-
	Sebi96g00042	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	459	471	IPR008271	GO:0004672\|GO:0006468
	Sebi96g00042	661	CDD	lectin_legume_LecRK_Arcelin_ConA	27	255	IPR001220	GO:0030246
	Sebi96g00042	661	ProSitePatterns	Legume lectins alpha-chain signature.	228	237	IPR000985	-
	Sebi96g00042	661	PANTHER	-	56	623	-	-
	Sebi96g00042	661	SUPERFAMILY	Protein kinase-like (PK-like)	312	613	IPR011009	-
	Sebi96g00042	661	Gene3D	-	26	264	-	-
	Sebi96g00042	661	Gene3D	Transferase(Phosphotransferase) domain 1	406	619	-	-
	Sebi96g00042	661	SMART	serkin_6	331	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi96g00042	Sebi-Chr96	751835	753820	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi96g00042	69	627	Receptor kinase-like Gene Family	AT4G02420	39.262	2.33e-121	374

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Sebi96g00042		Pkinase	2.1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi96g00042	-		-	gmx:100785031	1099.35