Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi96g00039 ATGTTTTCGTGGTTGGCAAGGATAGTTTCTGCGTGCTTGAGACCGGTGAGGCGATATGCACGTATGAGCAAGGATGATGAGTTTGATAGCTCTTCCACCGTTGAAGATGCTCTCGTGTGGTACAGGGACCTCGAGAAGCACTCTTGTGGTGAGTTTTCCTTTGCAGTGGTTCAGGCCAACGAAGTTATTGAGGATCATAGCCAGGTTGAGACCGGTTCTGATGCTGTCTTTGTTGGTGTCTACGATGGCCATGGTGGTCCAGAAGCTTCCCGGTTCATCAATGATCACCTCTTCCATAATCTTATGAGGGTTGCTCAAGAAAATGGTTCTATCTCTGAAGATATTATCAGGAATGCTGTTTCTGCTACCGAGGATGGGTTTCTGACACTTGTTCGAAGGAGCTATGGAATAAAGCCTTTGATAGCAGCAATGGGTTCTTGTTGTCTTGTTGGTGTTATCTGGAAAGGGACACTATATATTGCCAATCTTGGAGACTCTCGTGCTGTAATTGGTTCTACAGGTGGATCTAACAAAATCATTGCTGAACAGTTGACCAAAGAGCACAATGCTAGCAAAGAGGAGGTTAGACGAGAACTCAGATCTTTGCATCCAGAAGATTCACAAATTGTAGTTATGAAGCATGGAACATGGCGCATTAAAGGCATCATCCAGGTATCCAGATCTATAGGAGATGCATATTTGAAGCGGCCGGAGTTCTCTTTCGATCCTTCATTCCCACGGTTCCACCTACCTGAACCTATTCGTCGTCCTGTGCTAACAGCAGAACCATCTATATGTTCAAGAGTTTTACAACCTAATGATAAGTTCATCATATTTGCATCTGATGGACTTTGGGAACATATGACAAATCAGGAGGCAGTTGAAATTGTTTATAACAATCCACGAACTGGGATTGCAAGAAGACTTATTAAGGCTGCTCTAAATGAAGCAGCTAGGAAAAGGGAAATGAGATATAAAGACCTTCAGAAGGTTGAAAAGGGGATTAGGCGTTTTTTCCATGATGATATCACAGTGGTTGTTATCTTCATTGACCATGAGTTGCGAGAGAAGAATGTTACAGTTCCTGAGTTGTCCATCAAAGGGTTTATTGACACGGTTGGACCATCAAATTTTAGGAGTTTCCAGGAAATGGAATGA 1158 0.4301 MFSWLARIVSACLRPVRRYARMSKDDEFDSSSTVEDALVWYRDLEKHSCGEFSFAVVQANEVIEDHSQVETGSDAVFVGVYDGHGGPEASRFINDHLFHNLMRVAQENGSISEDIIRNAVSATEDGFLTLVRRSYGIKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSTGGSNKIIAEQLTKEHNASKEEVRRELRSLHPEDSQIVVMKHGTWRIKGIIQVSRSIGDAYLKRPEFSFDPSFPRFHLPEPIRRPVLTAEPSICSRVLQPNDKFIIFASDGLWEHMTNQEAVEIVYNNPRTGIARRLIKAALNEAARKREMRYKDLQKVEKGIRRFFHDDITVVVIFIDHELREKNVTVPELSIKGFIDTVGPSNFRSFQEME 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi96g00039 385 SUPERFAMILY PP2C-like 57 351 IPR036457 -
Sebi96g00039 385 Gene3D - 24 360 IPR036457 -
Sebi96g00039 385 ProSiteProfiles PPM-type phosphatase domain profile. 51 350 IPR001932 -
Sebi96g00039 385 CDD PP2Cc 52 350 IPR001932 -
Sebi96g00039 385 SMART PP2C_4 31 348 IPR001932 -
Sebi96g00039 385 Pfam Protein phosphatase 2C 65 319 IPR001932 -
Sebi96g00039 385 FunFam Probable protein phosphatase 2C 42 42 358 - -
Sebi96g00039 385 Coils Coil 181 201 - -
Sebi96g00039 385 ProSitePatterns PPM-type phosphatase domain signature. 77 85 IPR000222 GO:0043169
Sebi96g00039 385 PANTHER PROTEIN PHOSPHATASE 35 348 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi96g00039 Sebi-Chr96 715572 719074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi96g00039 1 381 PP2C-type Phosphatase Gene Family AT5G06750 71.100 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi96g00039 K01102 - gmx:100813740 708.753