Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi96g00018 ATGTCTATTTGCAGCACTGCTGGCTGCCCATTTGGTGAGGGCTGCCACTTCTTGCATTATGTTCCTGGTGGTTATAATGCTGTTGCCCAGATGATGAATCTAAAACCTGCTGCACCTCCATCTAGAAATGTTGCCGCACCACCACCAGTCCCTAATGGGTCTGCACCAGCTGCTGCTAAAACCCGCATATGTAACAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAACCTATTGCTCCATCTATTGATGATCATCGTCCTATGCGACCTACAACCGCTGGTCATATGCCTGCTCGAATCGAGGCTCCTCCCGGTCCAGCTGCTAGCTTTGGTGCTAGTTCCACTGCGAAGATTAGTGTAGAAGCTTCCTTGGCTGGAGCTATCATTGGAAAGGGGGGTGTAAACTCAAAGCAGATCTGTCGGCAAACAGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGATCCAAATCTTAGAAATATTGAACTTGAGGGAACCTTTGAACAAATTAAGGAAGCAAGTAACATGGTAAAAGAGTTACTTCTGACTGTGTCAATGTCTGCCCCGCCTAAATCCACCCCAGGTGTTCCTGGTGCCCCAGCCCCAGCAGGTAGCAACTTCAAGACAAAGCTGTGTGACAATTTTGCAAAAGGATCTTGCACCTTTGGAGAAAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGCAAGATAGGAATCTGA 765 0.4719 MSICSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLKPAAPPSRNVAAPPPVPNGSAPAAAKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHRPMRPTTAGHMPARIEAPPGPAASFGASSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASNMVKELLLTVSMSAPPKSTPGVPGAPAPAGSNFKTKLCDNFAKGSCTFGERCHFAHGAAELRKIGI 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi96g00018 254 Pfam RNA-binding, Nab2-type zinc finger 8 19 - -
Sebi96g00018 254 ProSiteProfiles Zinc finger C3H1-type profile. 220 247 IPR000571 GO:0046872
Sebi96g00018 254 MobiDBLite consensus disorder prediction 38 57 - -
Sebi96g00018 254 SUPERFAMILY CCCH zinc finger 220 250 IPR036855 GO:0046872
Sebi96g00018 254 ProSiteProfiles Type-1 KH domain profile. 127 191 - -
Sebi96g00018 254 SMART kh_6 126 196 IPR004087 GO:0003676
Sebi96g00018 254 SMART c3hfinal6 58 85 IPR000571 GO:0046872
Sebi96g00018 254 SMART c3hfinal6 220 246 IPR000571 GO:0046872
Sebi96g00018 254 FunFam Zinc finger CCCH domain-containing protein 53 90 - -
Sebi96g00018 254 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 60 85 IPR000571 GO:0046872
Sebi96g00018 254 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 245 IPR000571 GO:0046872
Sebi96g00018 254 CDD KH-I_AtC3H36_like 130 195 - -
Sebi96g00018 254 PANTHER CCCH ZINC FINGER/TIS11-RELATED 5 108 IPR045877 GO:0003729
Sebi96g00018 254 Gene3D - 54 90 - -
Sebi96g00018 254 Gene3D - 219 251 - -
Sebi96g00018 254 FunFam Zinc finger CCCH domain-containing protein 215 251 - -
Sebi96g00018 254 Pfam KH domain 130 193 IPR004088 GO:0003723
Sebi96g00018 254 SUPERFAMILY CCCH zinc finger 58 89 IPR036855 GO:0046872
Sebi96g00018 254 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 117 197 IPR036612 GO:0003723
Sebi96g00018 254 ProSiteProfiles Zinc finger C3H1-type profile. 58 86 IPR000571 GO:0046872
Sebi96g00018 254 Gene3D K Homology domain, type 1 123 218 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi96g00018 Sebi-Chr96 381536 382300 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi96g00018 KH_1 2.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi96g00018 - - pvu:PHAVU_007G259300g 450.669