Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi96g00003 ATGTATCTAAATAACAACATAACCAAGTTTGGTGAATCTGCACTACAGCAAAGCTTTGAGCCCATCAAATCACCCTGCATCACCATCACTCCTTTGCAAACAACAGCAACCGTTGATGTTCAAACTCAGCAACACAATCAGAATCAGATTGACCTTCCTGTTTGGAGCATTGAGTTTCCAATGACAACAACAGACTCTTCATTTTTGTATTTCCAAGCCTCTGAAGATAACTACTCTGCTAGTACCACCAAACAAGATCACCTTACCTCCTCTCAATTCACAAGCTCCTTCCAATCGGTTGCAGAGTCTTTCATGTCTAGCAGTGAAGATAGAATTTCTTCTTCTGAAAAGTATAGTGAATTTCCTTCCTGTTCTGGAAAATTTGATGGTTTTCTGTCTGACAATACACCAATTTATGAGCACTTTGCACAAGAACATCAGAGCATGCTGGAGGATGATGCTTCCCCAGATAAGAGGTCCCTTGAAATTTCCTTTCAGAGAACTCAGTGTGATTTATGCACAGAGCCAGACAAGCAGTCTTCACCTTGTGGAGTTGCTTTTGAAACAACTAGCAACTGTGATTCCAGGGGAACAGCAACTCGTAAAAGAAGAATAAGATGGACAAAAGAACTGCATGAGCCATTTATTAAGATTGTTAACCACCTTGGTGGCCCAGAAAAGGCAAAGCCTAAGGCTATACTAGAGATGATGGGTTCGGATGTGCTGACCATTTCACAAGTTAAAAGTCATTTGCAGGTAGATCCGATGAAGAACATAAAAAAGACGGGATTACTGAGCTTCAAGTCCAAATCTCAGGCCAAACCAAGTGGTGGGGCCTCTTCATCTTCTTCTTCATCCATAGGGCCAAAGAAGGGAAGGGGTGGTGCTGTTCAGGGAGCTCAGCCTCCTAGGTGTCAGGTTGAGGGTTGTAAAGTAGATCTGAGTGGTGCTAAGGCTTACTATTCTAGGCATAAAGTTTGTGGCATGCATTCGAAATCTCCTACTGTCGTTGTCGCTGGTCTGGAGCAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGAAGCTGCCGAAGGCGCCTAGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCAAGCTCCTTATTAGCCTCACGTTATGCCAGACTTTCTTCACCTATTTTTGAAAACAATGGCAGAGGTGGTGGTTTTATGATGGAATTTGCTCCATACCCAAAGCTTACTCTGAGAAATGCATCACCAACTCCCAGATCATCTGAGCCTGTTCCAGATAACCACACTACAACACTTACCTGGCAGGCCAATTCACAGACACCATCTGACTTTTTCCTGCAGGACTCAGTGGGTGGGACAAGCTTCCTTGGTCCCAGACATCATCCTCCAGTGGAAAGTTACACTGAAGTTGCAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAACACCAAGTGGTGAGCTGAATAACTTGTTGAATTTCAATGGGACACTCATGACACAACTTGCTGCATCTTCTCCAGTTGCAGCCATCCATCAACTTCCAAATGCCTCATGGTATTTCAAAGGTGTTGGTTCTGATAATTGTTCACCCGAGATTGTCCCTGATCTCGGTCTGGGTCAGATTTCACAGTCTCTTCATAGCCATCCTCCTGGTGAGCTTGATGTGTCACAGCAGAACAGGAGGCATTACATGGATATGGGGCAGTCCAGGGCCTGTGAGTCTCCTCACTGGTCACATTAA 1788 0.4463 MYLNNNITKFGESALQQSFEPIKSPCITITPLQTTATVDVQTQQHNQNQIDLPVWSIEFPMTTTDSSFLYFQASEDNYSASTTKQDHLTSSQFTSSFQSVAESFMSSSEDRISSSEKYSEFPSCSGKFDGFLSDNTPIYEHFAQEHQSMLEDDASPDKRSLEISFQRTQCDLCTEPDKQSSPCGVAFETTSNCDSRGTATRKRRIRWTKELHEPFIKIVNHLGGPEKAKPKAILEMMGSDVLTISQVKSHLQVDPMKNIKKTGLLSFKSKSQAKPSGGASSSSSSSIGPKKGRGGAVQGAQPPRCQVEGCKVDLSGAKAYYSRHKVCGMHSKSPTVVVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLASRYARLSSPIFENNGRGGGFMMEFAPYPKLTLRNASPTPRSSEPVPDNHTTTLTWQANSQTPSDFFLQDSVGGTSFLGPRHHPPVESYTEVADSSCALSLLSSQTWGSRNTTPSGELNNLLNFNGTLMTQLAASSPVAAIHQLPNASWYFKGVGSDNCSPEIVPDLGLGQISQSLHSHPPGELDVSQQNRRHYMDMGQSRACESPHWSH 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi96g00003 595 SUPERFAMILY SBT domain 303 384 IPR036893 GO:0003677|GO:0005634
Sebi96g00003 595 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 253 IPR006447 GO:0003677
Sebi96g00003 595 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 107 532 IPR044817 GO:0003677
Sebi96g00003 595 FunFam Squamosa promoter-binding-like protein 14 296 366 - -
Sebi96g00003 595 Pfam Myb-like DNA-binding domain 206 252 IPR001005 -
Sebi96g00003 595 MobiDBLite consensus disorder prediction 269 303 - -
Sebi96g00003 595 ProSiteProfiles Zinc finger SBP-type profile. 302 379 IPR004333 GO:0003677
Sebi96g00003 595 SUPERFAMILY Homeodomain-like 200 253 IPR009057 -
Sebi96g00003 595 MobiDBLite consensus disorder prediction 269 289 - -
Sebi96g00003 595 Gene3D - 295 366 IPR036893 GO:0003677|GO:0005634
Sebi96g00003 595 Gene3D - 201 258 - -
Sebi96g00003 595 Pfam SBP domain 305 378 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi96g00003 Sebi-Chr96 25996 43638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi96g00003 303 590 SBP-box Gene Family AT2G42200 44.872 4.15e-59 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi96g00003 SBP 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi96g00003 - - gmx:100807165 478.404