Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi969g00004 ATGGTTTACTCCTTCTGTGACAAAAGCTCTTTATCTGGCTATGATGGTTTCAATACCACTTTGCATAACCTTGGAACTTCCAGTGGTGTTTTGGGAGGTGGGTCGTCATCATCTCATTCATTGGTTTTTGAGAGTGAAAAGGGAGAGTTGGTGAAGTGCCCTTCAACTGCAAGGGTAGGAAAGAATGAGATTTCTGAGGCCAAAGCCTTAGCTGCTTTGAAGAGCCATAGTGAAGCAGAGAGGAGGAGGAGGGAGAGAATAAATGGTCATCTTGCAACACTACGTGGTCTTGTGCCCTCCACTGAAAAGGTTAGCATGTTCATCAAAATATGA 333 0.4414 MVYSFCDKSSLSGYDGFNTTLHNLGTSSGVLGGGSSSSHSLVFESEKGELVKCPSTARVGKNEISEAKALAALKSHSEAERRRRERINGHLATLRGLVPSTEKVSMFIKI 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi969g00004 110 Gene3D - 67 108 IPR036638 GO:0046983
Sebi969g00004 110 Pfam Helix-loop-helix DNA-binding domain 75 100 IPR011598 GO:0046983
Sebi969g00004 110 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 105 IPR036638 GO:0046983
Sebi969g00004 110 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 110 IPR011598 GO:0046983
Sebi969g00004 110 PANTHER TRANSCRIPTION FACTOR BHLH30 31 103 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi969g00004 Sebi-Chr969 52520 52976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi969g00004 13 103 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 46.154 1.20e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi969g00004 HLH 9.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi969g00004 - - gmx:100804756 126.331