Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi968g00011 ATGCCTGCTCTGCGCCAAGATATGGAGACTTGTTTGGTAATAATAATATCCTGTTTCATTAGATTAATCTTGTTTTTGATGGATGTAGAGCCTGCACTTGCACTTAACTGTCCTGAATTATGGTGCGGAAATCAGGTGGTTCGATTCCCGTTCCGAATCAAAGGGCGCCATCCACCACTCTGTGGCTATCCGGGTCCGGGCTTTGATTTATTTTGTTCCTCAATGAATGAGACTGTGATTCAACTCCCTAAGTCAGTGAAGCTCAATGTCAACTATATTGACTACATACACCAAACTATTGAATTATATGATCCACATGGCTGCCTTCCCAGACACCTCCCCAACCTCACTCCTTCAGCTTCCCACTTCCAGTTCCAGCAGCCCTACTACTATTATGATAGCTATTACTTTTTCAACTGTTCACCGATGAACAGAGATACTATAGACTACTATTTGGTTCCATGCCTAACCACCTCTACCTCTCAAGCATACGCCATTCCCTCTAGTAGAACCATCGAGTACCTGCCCCTGTCTTTTTGCACCAAAATGTTTAATATTTCATCCTTCCCTTCTGATTTTAATTCCGAGGACAACGTTCTTCGTTTGACATGGTCTGAGCCAAACTGTAAACATTGCGAATCAAAAGGGAACAGGTGTGGGTGGAAGAATAATACTGTCAACAAAGAAATATATTGTTTCGCCAATCACAAAGGTTCATCAACAGCTCTAGTGACCACAGGATCAGTCTTAGGATCGTTGTTTTTTGTCCTGTTGACTGGTGCAGTCTACCACATCTATGACTCTTACATACTCAATAAAGAAAAACAAGCAATTATTGAAAAATTTCTACAAGACTACAGAGCTCTCAAGCCCACCAGATACTCTTATGTCGAAATTAAGAGAATCACCAATAATTTTAAGGAAAAGTTAGGACAGGGAGCCTATGGAGCTGTGTTTAAAGGAAGCATTTCAAAAGAATTTACTGTTGCTGTCAAGATCCTCAATGTTTCCCTAGGAAATGGGGAAGACTTTATTAATGAAGTTGGGACAATGGGTAGAATTCACCATCTTAACATTGTTTGCTTGGTCGGTTTCTGTGCTGATGGCTTTAAAAGAGCTCTCATCTATGAGTTCTTACCAAATGGTTCATTGCAGAAGTTCATAAATTCACCAGATAACAGGGAAAACTTCCTTGGTTGGAAAAGGTTGCATGAAATTGCTTTAGGTATAGCCAAAGGAATTGAGTATCTTCATCAAGGTTGTGATCAGCGCATTCTCCATTTTGATATCAAACCTCAAAATGTGTTACTAGACCAAAACTTTACTCCAAAAATATGTGACTTTGGTCTAGCAAAATTGTGTTCAAGGGATCAGAGCATAGTGTCCATGACTACAGCTAGAGGAACTTTGGGCTACATTGCTCCTGAAGTTTTCTCAAGAAACTTTGGCAATGTATCATACAAATCAGATGTGTATAGTTATGGAATGATGCTGCTTGAAACAATAGGAGGGAGGAAGATCACAGAGGACTTGGAGGAAAACACTAGCCATGTTTACTATCCAGAATGGGTTCATAATCTTTTAGAAGAACATGAGGAAATGAGAATTCATGTTGATGATGAAGGGGATGCAAAGATTGCAAGGAGTCTGGCAATTGTGGGACTTTGGTGCATCCAATGGCATGCTATGGATCGACCATCAATGCAAATGGTGGTTCAAATGTTAGAGGGAGACATAGACAGATCCCCAATACCTCCTAATCCTTTTGCTTCAGCAGGACAAAGGAGAAAAGGTGCAACTGCAACTGTGGGTGCGCCGGCTAGGCAGCTGACCCAAAATTTAGAAGTAATCCAAGAGTTAGATTGA 1866 0.4078 MPALRQDMETCLVIIISCFIRLILFLMDVEPALALNCPELWCGNQVVRFPFRIKGRHPPLCGYPGPGFDLFCSSMNETVIQLPKSVKLNVNYIDYIHQTIELYDPHGCLPRHLPNLTPSASHFQFQQPYYYYDSYYFFNCSPMNRDTIDYYLVPCLTTSTSQAYAIPSSRTIEYLPLSFCTKMFNISSFPSDFNSEDNVLRLTWSEPNCKHCESKGNRCGWKNNTVNKEIYCFANHKGSSTALVTTGSVLGSLFFVLLTGAVYHIYDSYILNKEKQAIIEKFLQDYRALKPTRYSYVEIKRITNNFKEKLGQGAYGAVFKGSISKEFTVAVKILNVSLGNGEDFINEVGTMGRIHHLNIVCLVGFCADGFKRALIYEFLPNGSLQKFINSPDNRENFLGWKRLHEIALGIAKGIEYLHQGCDQRILHFDIKPQNVLLDQNFTPKICDFGLAKLCSRDQSIVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGRKITEDLEENTSHVYYPEWVHNLLEEHEEMRIHVDDEGDAKIARSLAIVGLWCIQWHAMDRPSMQMVVQMLEGDIDRSPIPPNPFASAGQRRKGATATVGAPARQLTQNLEVIQELD 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi968g00011 621 FunFam serine/threonine-protein kinase PBS1-like 272 378 - -
Sebi968g00011 621 SMART serkin_6 304 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi968g00011 621 Pfam Wall-associated receptor kinase galacturonan-binding 37 104 IPR025287 GO:0030247
Sebi968g00011 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Sebi968g00011 621 FunFam PR5-like receptor kinase 379 586 - -
Sebi968g00011 621 Gene3D Transferase(Phosphotransferase) domain 1 379 582 - -
Sebi968g00011 621 ProSiteProfiles Protein kinase domain profile. 304 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi968g00011 621 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Sebi968g00011 621 PANTHER RUST RESISTANCE KINASE LR10-RELATED 275 592 IPR045874 GO:0004672
Sebi968g00011 621 SUPERFAMILY Protein kinase-like (PK-like) 286 576 IPR011009 -
Sebi968g00011 621 Pfam Protein kinase domain 306 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi968g00011 621 Gene3D Phosphorylase Kinase; domain 1 278 378 - -
Sebi968g00011 621 MobiDBLite consensus disorder prediction 585 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi968g00011 Sebi-Chr968 190986 193265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi968g00011 12 588 Receptor kinase-like Gene Family AT1G66910 36.646 4.91e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Sebi968g00011 Pkinase 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi968g00011 - - lang:109328752 852.047