Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi968g00005 ATGATTGAATACAGTCCACCGCCCCCACTACCATATTTGGTGAGATTGTCACTATTGCTTACAGTACCAAACCCAAAATTCAATCCTGCTTTCCCAAACATGAACATTCCCAACCCAATTCTCACCCTCTCCTTCCTCTTCCTCTTCCTCTTCAACCCTCCTCTAAAACACCTCCTAGTGGTAGCAACCATAGAATTAGAAACATGCTTGGACAGTGTTTGCCAGGCAAAGGAGCCAATAATCCGATTCCCCTTCCATATAGAGGGAAAGCAGGAAAAAACATGTGGATACCCAGGGTTCAAGTTATCCTGCAGTGAGAAAGGCCAAACACTGCTCAACCTACCTTACACCGGAGGAGAATTCAGTATCCAAGCAATAAACTATGCCGCTCAACAACTATGGCTGAATGACCCTAACAATTGCCTCCCAAAACGCATTCTCTCACTCAACCTCTCTGCCTCTCCATTCGACGCCGTTTACTATCAACAATTCACCTTCTTTAACTGCTCCTCCAACTTAGAGTACCTCAAGTATCGATACAAACCCATAGCTTGTCTCAGCGATTCTTCTAATAAGTACATCGTTTTCGCAACGCCTTCCCCCTCTGTGTTCGCGCACTTGTCCTCTGTTTGCGATTTGGTCCACACGGTGAAGGTGCCTGTTCAGTCGCCGTTTTACGATCATGTGATGTCGTCTGACCTCACCGACGATCTCCGCCTCTCGTGGGATTCGCCGTCGTGTGGGAGGTGTGCGTCTCACGGTGGCCGCTGTGGATTTAAAAACAACACGACGTTTGAACTTGCCTGTTTCGATGTCCCTTCACCAGGGATTTCCATTGGTGCAACTTACGTCTTAGCCATATGCATAGGAGTACCGGCACTGTTGTGCTTCATTGCACTATTGAGTTACATCTGCAGCAGGTTCAGGTTCAGGTTCAGAATAGGGGCCCACGGCTGGACTTGGACTTGGACATGGGCTCATGAGACAGTGGCAGATTTTGAGCCTCTTATTGACTCACGGTCCAATATTATTTCGGGCCTAGACAGGCCCACTATTGAGTCCTACCCAAAAATAGTTATAGGTGAAAACATACGCTTACCCAAACCCGATGACAATATCTGCCCAATATGTCTGTCAGAGTACATGCCCAAAGAGACGGTGAAAACCATACCTGAGTGTGAACATTGCTTTCATGCACAATGCATCGACGAATGGCTTCCACTGAATGCGTCGTGCCCAATTTGCCGAACTTCTCCCCCAAAATTACCACAACCGCTTGCTCCATCATGA 1290 0.4752 MIEYSPPPPLPYLVRLSLLLTVPNPKFNPAFPNMNIPNPILTLSFLFLFLFNPPLKHLLVVATIELETCLDSVCQAKEPIIRFPFHIEGKQEKTCGYPGFKLSCSEKGQTLLNLPYTGGEFSIQAINYAAQQLWLNDPNNCLPKRILSLNLSASPFDAVYYQQFTFFNCSSNLEYLKYRYKPIACLSDSSNKYIVFATPSPSVFAHLSSVCDLVHTVKVPVQSPFYDHVMSSDLTDDLRLSWDSPSCGRCASHGGRCGFKNNTTFELACFDVPSPGISIGATYVLAICIGVPALLCFIALLSYICSRFRFRFRIGAHGWTWTWTWAHETVADFEPLIDSRSNIISGLDRPTIESYPKIVIGENIRLPKPDDNICPICLSEYMPKETVKTIPECEHCFHAQCIDEWLPLNASCPICRTSPPKLPQPLAPS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi968g00005 429 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 42 419 IPR046948 -
Sebi968g00005 429 Pfam Wall-associated receptor kinase C-terminal 206 270 IPR032872 -
Sebi968g00005 429 SUPERFAMILY RING/U-box 365 420 - -
Sebi968g00005 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 421 IPR013083 -
Sebi968g00005 429 Pfam Wall-associated receptor kinase galacturonan-binding 69 137 IPR025287 GO:0030247
Sebi968g00005 429 Pfam Ring finger domain 373 416 IPR001841 -
Sebi968g00005 429 ProSiteProfiles Zinc finger RING-type profile. 374 416 IPR001841 -
Sebi968g00005 429 CDD RING-H2_EL5-like 373 416 - -
Sebi968g00005 429 SMART ring_2 374 415 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi968g00005 Sebi-Chr968 98873 101169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi968g00005 67 426 C3H Transcription Factor Family AT2G46495 36.264 8.56e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi968g00005 - - vvo:131661310 540.036